41419 (RT4) RpsD
Thalassiosira pseudonana

Chromosome Product Transcript Start End Strand Short Name
41419 chr_7 (RT4) RpsD 1634701 1635473 - RpsD
NCBI ID Ensembl Genomes exon ID
7450723 Thaps41419.1
Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0219
Normalized Mean Residue
Thaps_bicluster_0101
0.32
DEXDc superfamily
0.9488
(bd1709) NA
0.9449
DUF947
0.9408
hypothetical protein
0.9355
RRM_ABT1_like
0.9331
0.9311
RBFA
0.9288
(bd1667) Mpp10
0.925
(RL30) Ribosomal_L24e_L24
0.9237
COG1094
0.9229
Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RpsD Ribosomal protein S4 and related proteins [Translation, ribosomal structure and biogenesis] - 88.5206 5.52E-22 1 - 167 multi-dom 223596
T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_15757 PHATRDRAFT_15757 202012 184178 66337 Cre03.g170750.t1.2 AT5G15750.1 258892
KEGG description KEGG Pathway
Not available Not available
GO:0003735 GO:0005622 GO:0005840 GO:0006412 GO:0003723 -

structural constituent of ribosome

Details: 
The action of a molecule that contributes to the structural integrity of the ribosome.
GO Category: 
MF

intracellular

Details: 
The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO Category: 
CC

ribosome

Details: 
An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
GO Category: 
CC

translation

Details: 
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
GO Category: 
BP

RNA binding

Details: 
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO Category: 
MF
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