41425 MDH_cytoplasmic_cytosolic
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
41425 chr_7 MDH_cytoplasmic_cytosolic 1677377 1678609 - MDH_cytoplasmic_cytosolic

Synonyms

NCBI ID Ensembl Genomes exon ID
7450578 Thaps41425.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0421

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0161
 0.36

Most Highly Correlated Transcripts

bd643

(bd643) NA
0.9422

bd690

(bd690) NA
0.9381

bd415

(bd415) arom_aa_hydroxylase superfamily
0.931

bd410

(bd410) HNHc
0.9202

bd1934

(bd1934) NA
0.9191

20708

MPP_ACP5
0.9171

25895

hypothetical protein
0.892

268695

PRK07198
0.8918

22795

hypothetical protein
0.8826

32067

PTZ00182
0.8779

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases; MDH is one of the key enzymes in the citric acid... cl17195 547.995 0 9 - 338 specific 133421
LDH_MDH_like superfamily NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family; Members of... - 547.995 0 9 - 338 superfamily 266546
MalateDH-SF1 malate dehydrogenase; This model represents a family of malate dehydrogenases in bacteria and... - 443.694 1.59E-155 12 - 337 multi-dom 130820

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Cre02.g145800.t1.2 AT5G43330.1 358973

KEGG

KEGG description KEGG Pathway
Biosynthesis of secondary metabolites map01110

GO Terms

GO:0004553 GO:0005975 GO:0006100 GO:0016491 GO:0006108 GO:0016615 GO:0030060 -

GO:0004553

hydrolase activity, hydrolyzing O-glycosyl compounds

Details: 
Catalysis of the hydrolysis of any O-glycosyl bond.
GO Category: 
MF

GO:0005975

carbohydrate metabolic process

Details: 
The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
GO Category: 
BP

GO:0006100

NA

Details: 
NA
GO Category: 
NA

GO:0016491

oxidoreductase activity

Details: 
Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
GO Category: 
MF

GO:0006108

malate metabolic process

Details: 
The chemical reactions and pathways involving malate, the anion of hydroxybutanedioic acid, a chiral hydroxydicarboxylic acid. The (+) enantiomer is an important intermediate in metabolism as a component of both the TCA cycle and the glyoxylate cycle.
GO Category: 
BP

GO:0016615

malate dehydrogenase activity

Details: 
Catalysis of the reversible conversion of pyruvate or oxaloacetate to malate.
GO Category: 
MF

GO:0030060

L-malate dehydrogenase activity

Details: 
Catalysis of the reaction: (S)-malate + NAD+ = oxaloacetate + NADH + H+.
GO Category: 
MF

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