42213 PLN02286
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
42213 chr_13 PLN02286 401401 403121 + PLN02286

Synonyms

NCBI ID Ensembl Genomes exon ID
7453023 Thaps42213.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0229

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0162
 0.37

Most Highly Correlated Transcripts

268714

TypA_BipA
0.9245

bd1515

(bd1515) Adenylsuccinate_lyase_2
0.922

35164

acolac_lg
0.921

42226

PLN03233
0.9197

42621

HisS
0.9157

23887

hypothetical protein
0.9139

264345

SpoU
0.9127

22170

PCI
0.9125

23175

hypothetical protein
0.9122

269616

PLN03127
0.9121

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
ArgRS_core catalytic core domain of arginyl-tRNA synthetases; Arginyl tRNA synthetase (ArgRS) catalytic core... cl00015 224.751 1.40E-69 92 - 353 specific 185675
nt_trans superfamily nucleotidyl transferase superfamily; nt_trans (nucleotidyl transferase) This superfamily includes... - 224.751 1.40E-69 92 - 353 superfamily 260139
Anticodon_Ia_like superfamily Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains; This domain is... - 134.649 4.58E-37 397 - 547 superfamily 264512
PLN02286 arginine-tRNA ligase - 799.238 0 1 - 553 multi-dom 215160

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_bd552 PHATRDRAFT_bd552 206934 246242 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Aminoacyl-tRNA biosynthesis map00970

GO Terms

GO:0004814 GO:0005524 GO:0006420 GO:0004812 GO:0006418 -

GO:0004814

arginine-tRNA ligase activity

Details: 
Catalysis of the reaction: ATP + L-arginine + tRNA(Arg) = AMP + diphosphate + L-arginyl-tRNA(Arg).
GO Category: 
MF

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0006420

arginyl-tRNA aminoacylation

Details: 
The process of coupling arginine to arginyl-tRNA, catalyzed by arginyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA.
GO Category: 
BP

GO:0004812

aminoacyl-tRNA ligase activity

Details: 
Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP.
GO Category: 
MF

GO:0006418

tRNA aminoacylation for protein translation

Details: 
The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, to be used in ribosome-mediated polypeptide synthesis.
GO Category: 
BP

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