42226 PLN03233
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
42226 chr_13 PLN03233 502137 504172 + PLN03233

Synonyms

NCBI ID Ensembl Genomes exon ID
7446928 Thaps42226.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0229

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0162
 0.37

Most Highly Correlated Transcripts

269616

PLN03127
0.956

27873

PLN02274
0.9323

bd1515

(bd1515) Adenylsuccinate_lyase_2
0.9307

268714

TypA_BipA
0.9244

bd1828

(bd1828) NA
0.923

35164

acolac_lg
0.9217

42213

PLN02286
0.9197

263641

InfB
0.9166

269399

PLN02678
0.9152

26071

(PSB_1) Ntn_hydrolase superfamily
0.904

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
GST_C_AaRS_like Glutathione S-transferase C-terminal-like, alpha helical domain of various Aminoacyl-tRNA... cl02776 79.279 9.55E-18 17 - 103 specific 198322
GST_C_family superfamily C-terminal, alpha helical domain of the Glutathione S-transferase family; Glutathione S-transferase... - 79.279 9.55E-18 17 - 103 superfamily 261442
nt_trans superfamily nucleotidyl transferase superfamily; nt_trans (nucleotidyl transferase) This superfamily includes... - 363.11 2.97E-121 149 - 458 superfamily 260139
tRNA-synt_1c_C superfamily tRNA synthetases class I (E and Q), anti-codon binding domain; Other tRNA synthetase sub-families... - 123.526 1.72E-32 456 - 626 superfamily 252270
tRNA-synt_1c_C superfamily tRNA synthetases class I (E and Q), anti-codon binding domain; Other tRNA synthetase sub-families... - 123.526 1.72E-32 456 - 626 superfamily 252270
PLN03233 putative glutamate-tRNA ligase; Provisional - 1138.97 0 139 - 659 multi-dom 178772

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_51430 PHATRDRAFT_51430 200963 215943 Not available Cre11.g467547.t1.1 AT5G26710.1 284659

KEGG

KEGG description KEGG Pathway
Biosynthesis of secondary metabolites map01110

GO Terms

GO:0004818 GO:0005524 GO:0006424 GO:0004812 GO:0006418 GO:0005737 GO:0009332 -

GO:0004818

glutamate-tRNA ligase activity

Details: 
Catalysis of the reaction: ATP + L-glutamate + tRNA(Glu) = AMP + diphosphate + L-glutamyl-tRNA(Glu).
GO Category: 
MF

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0006424

glutamyl-tRNA aminoacylation

Details: 
The process of coupling glutamate to glutamyl-tRNA, catalyzed by glutamyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'- adenosine residue of the tRNA.
GO Category: 
BP

GO:0004812

aminoacyl-tRNA ligase activity

Details: 
Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP.
GO Category: 
MF

GO:0006418

tRNA aminoacylation for protein translation

Details: 
The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, to be used in ribosome-mediated polypeptide synthesis.
GO Category: 
BP

GO:0005737

cytoplasm

Details: 
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO Category: 
CC

GO:0009332

glutamate-tRNA ligase complex

Details: 
An enzyme complex that catalyzes the ligation of glutamate and tRNA(Glu) to form glutamyl-tRNA(Glu).
GO Category: 
CC

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