42412 RNAP_I_II_AC40
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
42412 chr_14 RNAP_I_II_AC40 568900 570239 + RNAP_I_II_AC40

Synonyms

NCBI ID Ensembl Genomes exon ID
7452692 Thaps42412.1, Thaps42412.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0227

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0259
 0.35

Most Highly Correlated Transcripts

3944

COG0218
0.9099

24217

hypothetical protein
0.9022

4372

hypothetical protein
0.897

1122

hypothetical protein
0.8943

32766

COG1936
0.8921

5540

hypothetical protein
0.8887

38193

MoaE
0.8834

25473

SpoU_methylase
0.883

269034

hypothetical protein
0.8737

21110

Sun
0.8694

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RNAP_I_II_AC40 AC40 subunit of Eukaryotic RNA polymerase (RNAP) I and RNAP III; The eukaryotic AC40 subunit of RNA... cl11409 398.12 3.04E-138 53 - 356 specific 132910
RNAP_RPB11_RPB3 superfamily RPB11 and RPB3 subunits of RNA polymerase; The eukaryotic RPB11 and RPB3 subunits of RNA polymerase... - 398.12 3.04E-138 53 - 356 superfamily 264356
PRK00783 DNA-directed RNA polymerase subunit D; Provisional - 201.652 4.99E-62 44 - 356 multi-dom 234837

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_52094 PHATRDRAFT_52094 225400 186719 237108 Cre07.g313302.t1.1 AT1G60850.1 356217

KEGG

KEGG description KEGG Pathway
RNA polymerase map03020

GO Terms

GO:0003677 GO:0003899 GO:0005634 GO:0006350 GO:0046983 GO:0003900 GO:0003901 GO:0003902 -

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

GO:0003899

DNA-directed RNA polymerase activity

Details: 
Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
GO Category: 
MF

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

GO:0006350

NA

Details: 
NA
GO Category: 
NA

GO:0046983

protein dimerization activity

Details: 
The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits.
GO Category: 
MF

GO:0003900

NA

Details: 
NA
GO Category: 
NA

GO:0003901

NA

Details: 
NA
GO Category: 
NA

GO:0003902

NA

Details: 
NA
GO Category: 
NA

Add comment

Log in to post comments