25473 SpoU_methylase
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
25473 chr_19a_19 SpoU_methylase 298266 300384 - SpoU_methylase

Synonyms

NCBI ID Ensembl Genomes exon ID
7449911 Thaps25473.4, Thaps25473.2, Thaps25473.3, Thaps25473.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0227

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0188
 0.22

Most Highly Correlated Transcripts

10278

YihA_EngB
0.9399

3858

PTZ00141
0.9319

34021

Methyltrn_RNA_3
0.9218

23679

Diphthamide_syn superfamily
0.9164

21110

Sun
0.9118

37374

PseudoU_synth superfamily
0.9106

21959

hypothetical protein
0.9104

42821

PRK14333
0.9088

24038

hypothetical protein
0.9073

3944

COG0218
0.9031

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
SpoU_methylase SpoU rRNA Methylase family; This family of proteins probably use S-AdoMet. cl17307 100.276 8.44E-25 306 - 469 specific 249983
SpoU_methylase superfamily SpoU rRNA Methylase family; This family of proteins probably use S-AdoMet. - 100.276 8.44E-25 306 - 469 superfamily 266618

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_38655 PHATRDRAFT_38655 197543 149150 357133 Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003723 GO:0006396 GO:0008173 -

GO:0003723

RNA binding

Details: 
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO Category: 
MF

GO:0006396

RNA processing

Details: 
Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
GO Category: 
BP

GO:0008173

RNA methyltransferase activity

Details: 
Catalysis of the transfer of a methyl group from a donor to a nucleoside residue in an RNA molecule.
GO Category: 
MF

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