4709 Adenylation_mRNA_capping
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
4709 chr_4 Adenylation_mRNA_capping 1712788 1714993 - Adenylation_mRNA_capping

Synonyms

NCBI ID Ensembl Genomes exon ID
7443738 Thaps4709.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0193

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0042
 0.43

Most Highly Correlated Transcripts

270251

(NTT4) hypothetical protein
0.8881

10058

hypothetical protein
0.8751

7975

eIF1_SUI1_like superfamily
0.8718

264023

RabGAP-TBC
0.87

13427

AarF
0.86

bd789

(bd789) ABC_ATPase superfamily
0.8509

7551

hypothetical protein
0.8473

261710

(STT3b) PMT_2 superfamily
0.8405

bd1161

(bd1161) NA
0.8379

8726

IPK
0.8371

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Adenylation_mRNA_capping Adenylation domain of GTP-dependent mRNA capping enzymes; RNA capping enzymes transfer GMP from GTP... cl12015 171.657 4.65E-49 428 - 662 specific 185706
Adenylation_DNA_ligase_like superfamily Adenylation domain of proteins similar to ATP-dependent polynucleotide ligases; ATP-dependent... - 171.657 4.65E-49 428 - 662 superfamily 264509
CYTH-like_mRNA_RTPase CYTH-like mRNA triphosphatase (RTPase) component of the mRNA capping apparatus; This subgroup... cl11964 146.014 1.80E-39 52 - 348 specific 143621
CYTH-like_Pase superfamily CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) Phosphatases; CYTH-like... - 146.014 1.80E-39 52 - 348 superfamily 264489

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available 190447 Not available Not available Not available 321313

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0004484 GO:0006370 GO:0006397 -

GO:0004484

mRNA guanylyltransferase activity

Details: 
Catalysis of the reaction: GTP + (5')pp-Pur-mRNA = diphosphate + G(5')ppp-Pur-mRNA; G(5')ppp-Pur-mRNA is mRNA containing a guanosine residue linked 5' through three phosphates to the 5' position of the terminal residue.
GO Category: 
MF

GO:0006370

7-methylguanosine mRNA capping

Details: 
Addition of the 7-methylguanosine cap to the 5' end of a nascent messenger RNA transcript.
GO Category: 
BP

GO:0006397

mRNA processing

Details: 
Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.
GO Category: 
BP

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