264023 RabGAP-TBC
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
264023 chr_13 RabGAP-TBC 590784 592931 + RabGAP-TBC

Synonyms

NCBI ID Ensembl Genomes exon ID
7447834 Thaps264023.3, Thaps264023.2, Thaps264023.1, Thaps264023.4

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0176

Most Highly Correlated Transcripts

bd1949

(bd1949) NA
0.9596

261466

0.8889

24206

COG1835
0.8869

24784

pepsin_like
0.8862

263483

CHD
0.885

263019

PLN02818
0.8803

37362

MCM
0.874

261357

NAD_binding_8 superfamily
0.8735

263610

COG3899
0.8714

4709

Adenylation_mRNA_capping
0.87

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RabGAP-TBC Rab-GTPase-TBC domain; Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are... cl02495 117.856 1.74E-30 249 - 405 specific 249964
RabGAP-TBC superfamily Rab-GTPase-TBC domain; Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are... - 117.856 1.74E-30 249 - 405 superfamily 261308

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_2527 PHATRDRAFT_2527 140646 96105 Not available Cre03.g195700.t1.1 AT1G04830.1 392357

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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