4710 KefB
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
4710 chr_4 KefB 1715472 1718553 + KefB

Synonyms

NCBI ID Ensembl Genomes exon ID
7451925 Thaps4710.2, Thaps4710.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0017

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0067
 0.47

Most Highly Correlated Transcripts

262069

KefB
0.9253

268908

Trans_IPPS_HH
0.9251

28326

lytB_ispH
0.9099

268592

VDE superfamily
0.9059

36669

TPT
0.9019

574

PRK05444
0.9017

4465

hypothetical protein
0.8998

262510

Alg6_Alg8 superfamily
0.8954

269655

PRK09330
0.8845

261400

NA
0.8831

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
EFh superfamily EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal... - 65.2617 7.87E-13 636 - 704 superfamily 238008
EFh superfamily EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal... - 65.2617 7.87E-13 636 - 704 superfamily 238008
KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism] cl10482 199.003 8.21E-56 201 - 605 specific 223551
KefB superfamily Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism] - 199.003 8.21E-56 201 - 605 superfamily 245312
TrkA_N superfamily TrkA-N domain; This domain is found in a wide variety of proteins. These protein include potassium... - 70.6755 2.95E-14 720 - 836 superfamily 251184
TrkA_N superfamily TrkA-N domain; This domain is found in a wide variety of proteins. These protein include potassium... - 70.6755 2.95E-14 720 - 836 superfamily 251184
PTZ00184 calmodulin; Provisional - 67.8642 5.19E-13 559 - 706 multi-dom 185504
Kch Kef-type K+ transport systems, predicted NAD-binding component [Inorganic ion transport and... - 65.5121 5.04E-12 706 - 847 multi-dom 224147

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005509 -

GO:0005509

calcium ion binding

Details: 
Interacting selectively and non-covalently with calcium ions (Ca2+).
GO Category: 
MF

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