508 CBF5
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
508 chr_6 CBF5 377095 378550 - CBF5

Synonyms

NCBI ID Ensembl Genomes exon ID
7448418 Thaps508.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0223

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0184
 0.33

Most Highly Correlated Transcripts

5540

hypothetical protein
0.9004

268598

COG1094
0.8954

3944

COG0218
0.8944

21305

hypothetical protein
0.8942

27873

PLN02274
0.8935

21050

Ras_like_GTPase superfamily
0.8933

4372

hypothetical protein
0.8919

22965

SrmB
0.8895

35164

acolac_lg
0.8879

33670

RNRR2
0.8876

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PseudoU_synth_hDyskerin Pseudouridine synthase, human dyskerin like; This group consists of eukaryotic and archeal... cl00130 386.232 1.80E-133 78 - 260 specific 211338
PseudoU_synth superfamily Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to... - 386.232 1.80E-133 78 - 260 superfamily 260207
DKCLD superfamily DKCLD (NUC011) domain; This is a TruB_N/PUA domain associated N-terminal domain of Dyskerin-like... - 110.122 1.32E-29 38 - 96 superfamily 254608
DKCLD superfamily DKCLD (NUC011) domain; This is a TruB_N/PUA domain associated N-terminal domain of Dyskerin-like... - 110.122 1.32E-29 38 - 96 superfamily 254608
PUA PUA domain; The PUA domain named after Pseudouridine synthase and Archaeosine transglycosylase, was... cl00607 92.1528 7.98E-23 287 - 360 specific 250644
PUA superfamily PUA domain; The PUA domain named after Pseudouridine synthase and Archaeosine transglycosylase, was... - 92.1528 7.98E-23 287 - 360 superfamily 260527
CBF5 rRNA pseudouridine synthase, putative; This family, found in archaea and eukaryotes, includes the... - 540.128 0 46 - 371 multi-dom 232971

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_20773 PHATRDRAFT_20773 279208 178095 313864 Cre03.g172950.t1.2 AT3G57150.1 258871

KEGG

KEGG description KEGG Pathway
Ribosome biogenesis in eukaryotes map03008

GO Terms

GO:0003723 GO:0004730 GO:0006396 -

GO:0003723

RNA binding

Details: 
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO Category: 
MF

GO:0004730

pseudouridylate synthase activity

Details: 
Catalysis of the reaction: D-ribose 5-phosphate + uracil = H(2)O + pseudouridine 5'-phosphate.
GO Category: 
MF

GO:0006396

RNA processing

Details: 
Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
GO Category: 
BP

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