516 (RPT5) RPT1
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
516 chr_6 (RPT5) RPT1 706931 708368 - RPT1

Synonyms

NCBI ID Ensembl Genomes exon ID
7443588 Thaps516.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0199

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0040
 0.39

Most Highly Correlated Transcripts

40962

(RPN8) PLN03246
0.9499

261400

NA
0.9431

26706

(PSA7) proteasome_alpha_type_7
0.9282

40483

(PSA4) Ntn_hydrolase superfamily
0.9245

11068

(PSA6) proteasome_alpha_type_6
0.9234

26868

(PSA3) proteasome_alpha_type_3
0.9202

13393

PLN02321
0.9062

22673

NA
0.9006

37861

(RPN3) Rpn3_C
0.8972

35136

NA
0.8969

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an... cl18944 88.7423 8.20E-21 222 - 394 specific 99707
AAA superfamily The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an... - 88.7423 8.20E-21 222 - 394 superfamily 267297
RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover,... - 515.663 0 64 - 477 multi-dom 224143

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_9090 PHATRDRAFT_9090 173987 318633 428621 Cre10.g439150.t1.2 AT3G05530.1 557274

KEGG

KEGG description KEGG Pathway
Proteasome map03050

GO Terms

GO:0000166 GO:0017111 GO:0005524 GO:0005634 GO:0005737 GO:0016787 GO:0030163 -

GO:0000166

nucleotide binding

Details: 
Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
GO Category: 
MF

GO:0017111

nucleoside-triphosphatase activity

Details: 
Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate.
GO Category: 
MF

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

GO:0005737

cytoplasm

Details: 
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO Category: 
CC

GO:0016787

hydrolase activity

Details: 
Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
GO Category: 
MF

GO:0030163

protein catabolic process

Details: 
The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds.
GO Category: 
BP

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