5285 HMGB-UBF_HMG-box
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
5285 chr_5 HMGB-UBF_HMG-box 800772 802369 - HMGB-UBF_HMG-box

Synonyms

NCBI ID Ensembl Genomes exon ID
7446441 Thaps5285.1, Thaps5285.3, Thaps5285.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0399

Most Highly Correlated Transcripts

31652

HMGB-UBF_HMG-box
0.891

5614

hypothetical protein
0.8892

21986

hypothetical protein
0.8726

34590

nt_trans superfamily
0.8623

3803

hypothetical protein
0.8619

9174

DUF563
0.8586

4565

hypothetical protein
0.8582

6603

hypothetical protein
0.856

2097

hypothetical protein
0.8538

4276

hypothetical protein
0.8535

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins.... cl00082 58.7933 3.71E-11 86 - 186 specific 238686
HMG-box superfamily High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and... - 58.7933 3.71E-11 86 - 186 superfamily 260179

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003677 GO:0006355 -

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

GO:0006355

regulation of transcription, DNA-templated

Details: 
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO Category: 
BP

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