5557 DUS_like_FMN
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
5557 chr_5 DUS_like_FMN 1502675 1504764 - DUS_like_FMN

Synonyms

NCBI ID Ensembl Genomes exon ID
7445162 Thaps5557.2, Thaps5557.3, Thaps5557.1, Thaps5557.5, Thaps5557.4

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0321

Most Highly Correlated Transcripts

bd951

(bd951) NA
0.9234

268194

(Tp_Myb4R1b) SANT
0.9072

22918

hypothetical protein
0.8918

bd843

(bd843) NA
0.8902

6922

hypothetical protein
0.887

22931

Glycos_transf_1 superfamily
0.8771

18530

RNase_HII_bacteria_HII_like
0.8744

22882

PUB
0.8736

262616

(MYB22)
0.8701

262734

PLDc_PGS1_euk_1
0.8657

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the... cl17186 246.637 5.80E-77 94 - 322 specific 239200
TIM_phosphate_binding superfamily TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an... - 246.637 5.80E-77 94 - 322 superfamily 266538

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_4048 PHATRDRAFT_4048 142527 166419 43763 Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0008033 GO:0016491 GO:0050660 GO:0051341 -

GO:0008033

tRNA processing

Details: 
The process in which a pre-tRNA molecule is converted to a mature tRNA, ready for addition of an aminoacyl group.
GO Category: 
BP

GO:0016491

oxidoreductase activity

Details: 
Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
GO Category: 
MF

GO:0050660

flavin adenine dinucleotide binding

Details: 
Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2.
GO Category: 
MF

GO:0051341

regulation of oxidoreductase activity

Details: 
Any process that modulates the frequency, rate or extent of oxidoreductase activity, the catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
GO Category: 
BP

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