18530 RNase_HII_bacteria_HII_like
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
18530 chr_4 RNase_HII_bacteria_HII_like 63130 65075 + RNase_HII_bacteria_HII_like

Synonyms

NCBI ID Ensembl Genomes exon ID
7442026 Thaps18530.1, Thaps18530.4, Thaps18530.2, Thaps18530.3

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0321

Most Highly Correlated Transcripts

21165

(Tp_TAF9) TAF9
0.9119

21568

hypothetical protein
0.9088

12899

AAA
0.8945

2327

SMC_prok_B
0.8862

40335

PRK04184
0.8817

9912

hypothetical protein
0.8803

22802

hypothetical protein
0.8801

6217

O-FucT_like
0.8796

3663

hypothetical protein
0.8792

35798

AAA
0.877

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RNase_HII_bacteria_HII_like Bacterial Ribonuclease HII-like; This family includes mostly bacterial type 2 RNases H, with some... cl14782 284.648 2.78E-93 334 - 513 specific 260003
RNase_H_like superfamily Ribonuclease H-like superfamily, including RNase H, HI, HII, HIII, and RNase-like domain IV of... - 284.648 2.78E-93 334 - 513 superfamily 265450

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_6711 PHATRDRAFT_6711 181968 199608 194665 Cre13.g561900.t1.1 Not available 481980

KEGG

KEGG description KEGG Pathway
DNA replication map03030

GO Terms

GO:0003723 GO:0004523 GO:0004524 -

GO:0003723

RNA binding

Details: 
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO Category: 
MF

GO:0004523

RNA-DNA hybrid ribonuclease activity

Details: 
Catalysis of the endonucleolytic cleavage of RNA in RNA-DNA hybrids to 5'-phosphomonoesters.
GO Category: 
MF

GO:0004524

NA

Details: 
NA
GO Category: 
NA

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