5607 Choline_transpo superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
5607	chr_5	Choline_transpo superfamily	1626907	1628930	-	Choline_transpo superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7448173	Thaps5607.6, Thaps5607.3, Thaps5607.4, Thaps5607.5, Thaps5607.2, Thaps5607.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0092

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0024	0.39

Most Highly Correlated Transcripts

11268 hypothetical protein 0.8615	bd1670 (bd1670) SUL1 0.8576	1941 hypothetical protein 0.8571	5807 hypothetical protein 0.8514	22820 Choline_transpo 0.851	3323 hypothetical protein 0.848
261844 PLN02270 0.8438	10525 hypothetical protein 0.8437	10353 hypothetical protein 0.8388	22062 hypothetical protein 0.8387

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Choline_transpo superfamily		Plasma-membrane choline transporter; This family represents a high-affinity plasma-membrane choline...	-	150.059	8.04E-41	184 - 477	superfamily	252644

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

Add comment

Log in to post comments