261844 PLN02270
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
261844 chr_3 PLN02270 1330471 1333435 + PLN02270

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0093

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0036
 0.41

Most Highly Correlated Transcripts

1941

hypothetical protein
0.8878

21238

(ALD3) ALDH_F3-13-14_CALDH-like
0.8804

22844

Choline_transpo
0.8776

268931

hypothetical protein
0.8566

263035

HP_PGM_like
0.8543

21825

ANK
0.8536

29322

AAT_I superfamily
0.852

22804

Delta6-FADS-like
0.8473

34191

CobN_like
0.8472

1762

PRA1 superfamily
0.847

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PLDc_pPLD_like_2 Catalytic domain, repeat 2, of plant phospholipase D and similar proteins; Catalytic domain, repeat... cl15239 377.152 5.55E-125 541 - 750 specific 197240
PLDc_SF superfamily Catalytic domain of phospholipase D superfamily proteins; Catalytic domain of phospholipase D (PLD... - 304.32 1.31E-97 261 - 438 superfamily 265651
PLDc_pPLD_like_1 Catalytic domain, repeat 1, of plant phospholipase D and similar proteins; Catalytic domain, repeat... cl15239 304.32 1.31E-97 261 - 438 specific 197237
PLDc_SF superfamily Catalytic domain of phospholipase D superfamily proteins; Catalytic domain of phospholipase D (PLD... - 304.32 1.31E-97 261 - 438 superfamily 265651
C2 C2 domain; The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-... cl14603 78.2627 5.02E-17 85 - 185 specific 175973
C2 superfamily C2 domain; The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-... - 78.2627 5.02E-17 85 - 185 superfamily 265430
PLD_C superfamily Phospholipase D C terminal; This domain family is found in eukaryotes, and is approximately 70... - 79.0831 1.19E-17 775 - 842 superfamily 257003
PLN02270 phospholipase D alpha - 494.078 1.19E-161 80 - 845 multi-dom 165912

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_12431 PHATRDRAFT_12431 Not available Not available Not available Not available AT4G00240.1 264911

KEGG

KEGG description KEGG Pathway
Endocytosis map04144

GO Terms

GO:0003824 GO:0008152 GO:0004630 -

GO:0003824

catalytic activity

Details: 
Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO Category: 
MF

GO:0008152

metabolic process

Details: 
The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GO Category: 
BP

GO:0004630

phospholipase D activity

Details: 
Catalysis of the reaction: a phosphatidylcholine + H2O = choline + a phosphatidate.
GO Category: 
MF

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