5715 AhpC-TSA_2Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
5715	chr_5	AhpC-TSA_2	1898861	1899992	+	AhpC-TSA_2

Synonyms

NCBI ID	Ensembl Genomes exon ID
7442261	Thaps5715.3, Thaps5715.4, Thaps5715.5, Thaps5715.2, Thaps5715.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0026

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0104	0.31	0.00019 10

Most Highly Correlated Transcripts

36669 TPT 0.9026	36235 p450 superfamily 0.9003	22673 NA 0.8976	38306 Chloroa_b-bind 0.8969	14192 PLN02449 0.8956	30976 FKBP_C 0.8906
1584 cyclophilin 0.8885	268192 Zip superfamily 0.8861	32321 TRX_family 0.8855	36037 Trypsin_2 0.8824

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
AhpC-TSA_2		AhpC/TSA antioxidant enzyme; This family contains proteins related to alkyl hydro-peroxide...	cl00388	104.694	2.10E-28	89 - 198	specific	258177
Thioredoxin_like superfamily		Protein Disulfide Oxidoreductases and Other Proteins with a Thioredoxin fold; The thioredoxin (TRX...	-	104.694	2.10E-28	89 - 198	superfamily	260398

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_44411	PHATRDRAFT_44411	Not available	223249	369957	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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