5904 NhaP
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
5904 chr_6 NhaP 213846 217620 - NhaP

Synonyms

NCBI ID Ensembl Genomes exon ID
7451113 Thaps5904.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0268

Most Highly Correlated Transcripts

10409

hypothetical protein
0.8976

23332

COG0790
0.8893

4047

hypothetical protein
0.8857

24565

COG3899
0.8823

263610

COG3899
0.8781

37824

Peptidase_C1A
0.8739

25135

DENN superfamily
0.8708

8762

SNF2_N
0.8704

10297

hypothetical protein
0.8699

25451

AAA superfamily
0.8666

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism] cl00454 165.932 9.32E-44 720 - 1195 specific 223104
TM_PBP1_branched-chain-AA_like superfamily Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC... - 165.932 9.32E-44 720 - 1195 superfamily 260432

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
39225 PHATRDRAFT_43552 PHATRDRAFT_43552 201416 246262 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0006814 GO:0006885 GO:0015385 GO:0016021 GO:0015299 -

GO:0006814

sodium ion transport

Details: 
The directed movement of sodium ions (Na+) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO Category: 
BP

GO:0006885

regulation of pH

Details: 
Any process involved in the maintenance of an internal equilibrium of hydrogen ions, thereby modulating the internal pH, within an organism or cell.
GO Category: 
BP

GO:0015385

sodium:hydrogen antiporter activity

Details: 
Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: Na+(out) + H+(in) = Na+(in) + H+(out).
GO Category: 
MF

GO:0016021

integral component of membrane

Details: 
The component of a membrane consisting of gene products and protein complexes that have some part that penetrates at least one leaflet of the membrane bilayer. This component includes gene products that are buried in the bilayer with no exposure outside the bilayer.
GO Category: 
CC

GO:0015299

solute:hydrogen antiporter activity

Details: 
Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: solute(out) + H+(in) = solute(in) + H+(out).
GO Category: 
MF

Add comment

Log in to post comments