6165 SHQ1 superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
6165	chr_6	SHQ1 superfamily	874368	876278	+	SHQ1 superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7445931	Thaps6165.2, Thaps6165.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0129

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0035	0.44

Most Highly Correlated Transcripts

23092 hypothetical protein 0.8746	25576 Galactosyl_T superfamily 0.865	6838 DUF3754 0.8609	38652 PI-PLCc_eukaryota 0.8595	10475 hypothetical protein 0.8539	42646 PRK04342 0.8537
22142 hypothetical protein 0.85	7537 Anoctamin 0.8494	25016 ALDH-SF superfamily 0.8483	268472 Sugar_tr 0.8479

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
SHQ1 superfamily		SHQ1 protein; S. cerevisiae SHQ1 protein is required for SnoRNAs of the box H/ACA Quantitative...	-	171.661	1.01E-49	288 - 457	superfamily	252880

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	240894	57156	42339	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0005509 -

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