268472 Sugar_tr
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
268472 chr_3 Sugar_tr 992631 994932 - Sugar_tr

Synonyms

NCBI ID Ensembl Genomes exon ID
7448751 Thaps268472.2, Thaps268472.1, Thaps268472.3

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0126

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0105
 0.42

Most Highly Correlated Transcripts

262719

CHD
0.9058

24829

Ubox
0.8818

23092

hypothetical protein
0.8698

2241

Methyltransf_21
0.8628

5291

hypothetical protein
0.8612

22520

RecN
0.8577

23517

PRK13759
0.8577

11165

hypothetical protein
0.8557

261908

PLN02889
0.8534

21893

CysPc
0.8504

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
MFS superfamily The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that... - 118.185 5.12E-29 198 - 609 superfamily 119392
MFS superfamily The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that... - 118.185 5.12E-29 198 - 609 superfamily 119392
Sugar_tr Sugar (and other) transporter; Sugar (and other) transporter. - 310.387 9.24E-98 200 - 623 multi-dom 249572

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_12520 PHATRDRAFT_12520 200259 194385 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005355 GO:0006810 GO:0016020 GO:0005351 GO:0008643 GO:0005215 GO:0016021 GO:0008733 -

GO:0005355

glucose transmembrane transporter activity

Details: 
Catalysis of the transfer of the hexose monosaccharide glucose from one side of the membrane to the other.
GO Category: 
MF

GO:0006810

transport

Details: 
The directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter or pore.
GO Category: 
BP

GO:0016020

membrane

Details: 
Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
GO Category: 
CC

GO:0005351

sugar:hydrogen symporter activity

Details: 
Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: sugar(out) + H+(out) = sugar(in) + H+(in).
GO Category: 
MF

GO:0008643

carbohydrate transport

Details: 
The directed movement of carbohydrate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Carbohydrates are any of a group of organic compounds based of the general formula Cx(H2O)y.
GO Category: 
BP

GO:0005215

transporter activity

Details: 
Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells.
GO Category: 
MF

GO:0016021

integral component of membrane

Details: 
The component of a membrane consisting of gene products and protein complexes that have some part that penetrates at least one leaflet of the membrane bilayer. This component includes gene products that are buried in the bilayer with no exposure outside the bilayer.
GO Category: 
CC

GO:0008733

L-arabinose isomerase activity

Details: 
Catalysis of the reaction: L-arabinose = L-ribulose.
GO Category: 
MF

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