Explore network modules for Desulfovibrio vulgaris Hildenborough

Use residual and motif e-value sliders to filter modules

Residual: 0-0.3 Motif e-value 0-10
This is the section to display the module list


DVU0030 DVU0057 DVU0063 DVU0110 DVU0118 DVU0230 DVU0269 DVU0277 DVU0309 DVU0379 DVU0436 DVU0525 DVU0529 DVU0539 DVU0569 DVU0594 iciA DVU0596 lytR DVU0606 DVU0619 DVU0621 DVU0629 DVU0653 DVU0679 DVU0682 DVU0744 DVU0749 DVU0804 DVU0813 hrcA DVU0854 DVU0916 DVU0936 DVU0942 DVU0946 DVU1063 DVU1083 phoB DVU1142 DVU1144 DVU1156 DVU1331 DVU1340 DVU1402 DVU1419 DVU1517 DVU1518 DVU1547 DVU1561 DVU1572 DVU1584 DVU1628 rpoN DVU1645 DVU1674 DVU1690 DVU1730 DVU1744 DVU1745 DVU1754 DVU1759 DVU1760 DVU1788 rpoD DVU1949 nifA-1 DVU1964 DVU1967 DVU2036 DVU2086 DVU2097 DVU2106 DVU2111 DVU2114 DVU2195 DVU2251 DVU2275 DVU2319 DVU2359 DVU2378 DVU2394 DVU2423 DVU2527 DVU2532 DVU2547 DVU2557 birA DVU2567 DVU2577 DVU2582 DVU2588 DVU2633 DVU2644 DVU2675 DVU2686 DVU2690 DVU2785 DVU2788 DVU2799 DVU2802 DVU2819 DVU2827 DVU2832 DVU2835 DVU2836 DVU2886 DVU2894 DVU2909 DVU2934 DVU2953 DVU2956 DVU2960 DVU2989 pspF DVU3023 DVU3066 DVU3080 DVU3084 DVU3095 DVU3111 DVU3142 DVU3167 DVU3186 DVU3193 DVU3220 DVU3229 fliA DVU3255 DVU3305 DVU3313 DVU3334 DVU3381 DVUA0024 DVUA0057 DVUA0100 DVUA0143 nifA-2 DVUA0151
Network Exploration Help

This page gives you overview of the network modules for a particular organism. You can explore these modules by using various filters.

Currently we support two filters, Residual and Motif e-values. Network modules are loaded with default residual and motif e-value filters. In order to change filters, simply move the slider to select the desired range. Results table will automatically update to reflect your filter selections. If you would like to remove filters, click on "Reset Filters" button.

Network Table

Network table will show the following columns for each module.

Module: Number of the module for the given version of the network.

Residual: is a measure of bicluster quality. Mean bicluster residual is smaller when the expression profile of the genes in the module is "tighter". So smaller residuals are usually indicative of better bicluster quality.

Expression Profile: is a preview of the expression profiles of all the genes under subset of conditions included in the module. Tighter expression profiles are usually indicative of better bicluster quality.

Motif e-value: cMonkey tries to identify two motifs per modules in the upstream sequences of the module member genes. Motif e-value is an indicative of the motif co-occurences between the members of the module.Smaller e-values are indicative of significant sequence motifs. Our experience showed that e-values smaller than 10 are generally indicative of significant motifs.

Genes: Number of genes included in the module.

Functions: We identify functional enrichment of each module by camparing to different functional categories such as KEGG, COG, GO etc. by using hypergeometric function. If the module is significantly enriched for any of the functions, this column will list few of the these functions as an overview. Full list of functions is available upon visiting the module page under the Functions tab.


Inferelator algorithm identifies most probable regulatory influences for each module. These influences can be transcription factors or environmental factors. Influences section lists all the regulators that have influences on modules. Click on the regulator name If you would like to access which modules are regulated by these regulators.