Organism : Geobacter sulfurreducens | Module List :
methyl-accepting chemotaxis protein (VIMSS)
Functional Annotations (5)
|Methyl-accepting chemotaxis protein||cog/ cog|
|signal transducer activity||go/ molecular_function|
|signal transduction||go/ biological_process|
Regulation information for GSU0756(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for GSU0756
Module neighborhood information for GSU0756
|Gene||Common Name||Description||Module membership|
|GSU0053||GSU0053||hypothetical protein (VIMSS)||41, 317|
|GSU0359||GSU0359||sensory box protein/sigma-54 dependent transcriptional regulator (VIMSS)||122, 257|
|GSU0439||GSU0439||4-hydroxybenzoate octaprenyltransferase, putative (VIMSS)||107, 317|
|GSU0475||GSU0475||sensory box histidine kinase (VIMSS)||235, 317|
|GSU0528||GSU0528||nitroreductase family protein (NCBI)||122, 281|
|GSU0530||GSU0530||HIT family protein (VIMSS)||122, 281|
|GSU0549||GSU0549||conserved domain protein (NCBI)||122, 287|
|GSU0695||GSU0695||hypothetical protein (VIMSS)||317, 336|
|GSU0749||GSU0749||hypothetical protein (VIMSS)||78, 122|
|GSU0756||GSU0756||methyl-accepting chemotaxis protein (VIMSS)||122, 317|
|GSU0768||GSU0768||AzlC family protein (VIMSS)||99, 122|
|GSU0775||GSU0775||sensor histidine kinase (VIMSS)||122, 184|
|GSU0819||GSU0819||conserved hypothetical protein (VIMSS)||122, 337|
|GSU0835||GSU0835||hypothetical protein (VIMSS)||317, 331|
|GSU0836||GSU0836||nucleoside diphosphate kinase regulator protein, putative (VIMSS)||208, 317|
|GSU1052||GSU1052||hydrolase, alpha/beta fold family (VIMSS)||122, 153|
|GSU1053||GSU1053||sensory box protein (VIMSS)||122, 126|
|GSU1272||pyrC||dihydroorotase, multifunctional complex type (NCBI)||122, 281|
|GSU1305||gdhA||Glu/Leu/Phe/Val dehydrogenase family protein (NCBI)||32, 122|
|GSU2001||mutL||DNA mismatch repair protein MutL (NCBI)||122, 281|
|GSU2345||GSU2345||rsbU-related protein (VIMSS)||220, 317|
|GSU2352||GSU2352||sodium/solute symporter family protein (NCBI)||32, 122|
|GSU2411||GSU2411||conserved hypothetical protein TIGR00104 (VIMSS)||122, 281|
|GSU2432||GSU2432||cytochrome c family protein (VIMSS)||13, 122|
|GSU2441||GSU2441||conserved hypothetical protein (VIMSS)||287, 317|
|GSU2478||GSU2478||hypothetical protein (VIMSS)||6, 317|
|GSU2485||GSU2485||potassium transporter family protein (VIMSS)||308, 317|
|GSU2523||GSU2523||transcriptional regulator, LysR family (VIMSS)||137, 317|
|GSU2557||GSU2557||polysaccharide deacetylase family protein (NCBI)||122, 135|
|GSU2574||GSU2574||response regulator (VIMSS)||122, 287|
|GSU2768||GSU2768||hypothetical protein (VIMSS)||122, 135|
|GSU2815||GSU2815||sensory box histidine kinase (VIMSS)||97, 317|
|GSU2881||GSU2881||hypothetical protein (VIMSS)||122, 142|
|GSU2900||GSU2900||hypothetical protein (VIMSS)||115, 317|
|GSU2952||GSU2952||transcriptional regulator, ArsR family (VIMSS)||146, 317|
|GSU2953||arsC||arsenate reductase (NCBI)||317, 336|
|GSU3016||GSU3016||hypothetical protein (VIMSS)||122, 135|
|GSU3120||GSU3120||conserved hypothetical protein (VIMSS)||122, 135|
|GSU3266||GSU3266||DNA helicase II, putative (VIMSS)||317, 318|
|GSU3267||GSU3267||hypothetical protein (VIMSS)||241, 317|
|GSU3268||feoB-2||ferrous iron transport protein B (NCBI)||241, 317|
|GSU3270||feoA||feoA component of ferrous iron transporter (Dmitry Rodionov)||241, 317|
|GSU3271||GSU3271||hypothetical protein (VIMSS)||241, 317|
|GSU3319||ppiA||peptidyl-prolyl cis-trans isomerase A (NCBI)||97, 317|
|GSU3398||GSU3398||metal ion efflux outer membrane protein family protein, putative (VIMSS)||122, 337|
|GSU3399||GSU3399||efflux transporter, RND family, MFP subunit (NCBI)||122, 337|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Identification of functional enrichment for the module members is important in associating predicted motifs and regulatory influences with pathways. As described above, the network inference pipeline includes a functional enrichment module by which hypergeometric p-values are used to identify over representation of functional ontology terms among module members.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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