Organism : Geobacter sulfurreducens | Module List :
Regulation information for GSU0832(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for GSU0832
|Gene||Common Name||Description||Module membership|
|GSU0157||GSU0157||fibronectin type III domain protein (NCBI)||71, 222|
|GSU0288||GSU0288||PBS lyase HEAT-like repeat protein (NCBI)||210, 236|
|GSU0430||GSU0430||tail lysozyme, putative (NCBI)||86, 236|
|GSU0517||GSU0517||conserved domain protein (NCBI)||60, 236|
|GSU0523||pabB||para-aminobenzoate synthase, component I (NCBI)||71, 104|
|GSU0537||GSU0537||sensory box/GGDEF family protein (VIMSS)||236, 290|
|GSU0691||GSU0691||translation initation factor SUI1, putative (NCBI)||71, 79|
|GSU0730||GSU0730||hypothetical protein (VIMSS)||63, 236|
|GSU0811||ntrX||nitrogen regulation protein NtrX (NCBI)||71, 298|
|GSU0832||GSU0832||lipoprotein, putative (VIMSS)||71, 236|
|GSU0838||GSU0838||hypothetical protein (VIMSS)||155, 236|
|GSU0855||GSU0855||membrane protein, TerC family (NCBI)||59, 71|
|GSU0856||htpX||peptidase, M48 family (NCBI)||71, 321|
|GSU1038||GSU1038||sensory box histidine kinase/response regulator (VIMSS)||236, 269|
|GSU1096||pstB||phosphate ABC transporter, ATP-binding protein (NCBI)||16, 236|
|GSU1102||regX3||DNA-binding response regulator (NCBI)||115, 236|
|GSU1417||GSU1417||response regulator (VIMSS)||78, 236|
|GSU1419||GSU1419||transcriptional regulator, Cro/CI family (VIMSS)||219, 236|
|GSU1568||GSU1568||conserved hypothetical protein (VIMSS)||71, 198|
|GSU1569||GSU1569||transcriptional regulator, CopG family (VIMSS)||71, 318|
|GSU1676||GSU1676||hypothetical protein (VIMSS)||96, 236|
|GSU1697||GSU1697||membrane protein, putative (VIMSS)||236, 291|
|GSU1743||GSU1743||lipoprotein, putative (VIMSS)||166, 236|
|GSU1745||GSU1745||OmpA domain protein (VIMSS)||236, 265|
|GSU1858||GSU1858||IPT/TIG domain protein (VIMSS)||155, 236|
|GSU1877||fabK||oxidoreductase, 2-nitropropane dioxygenase family (NCBI)||71, 292|
|GSU1994||GSU1994||hypothetical protein (VIMSS)||71, 268|
|GSU2041||GSU2041||sigma-54 dependent DNA-binding response regulator (VIMSS)||71, 104|
|GSU2087||gmhA||phosphoheptose isomerase (NCBI)||71, 108|
|GSU2122||GSU2122||TraG family protein (VIMSS)||71, 206|
|GSU2175||GSU2175||trfA-related protein (VIMSS)||71, 189|
|GSU2191||GSU2191||aldehyde ferredoxin oxidoreductase, tungsten-containing (VIMSS)||71, 206|
|GSU2297||GSU2297||sensory box histidine kinase (VIMSS)||71, 181|
|GSU2303||GSU2303||Na+/H+ antiporter family protein (VIMSS)||20, 71|
|GSU2354||GSU2354||transcriptional regulator, IclR family (VIMSS)||49, 236|
|GSU2693||GSU2693||response regulator (VIMSS)||71, 338|
|GSU2769||GSU2769||metallo-beta-lactamase family protein (VIMSS)||71, 206|
|GSU2954||acr3||arsenical-resistance protein (NCBI)||71, 146|
|GSU3026||GSU3026||flagellar protein FlbD, putative (VIMSS)||110, 236|
|GSU3091||cvpA||CvpA family protein (NCBI)||16, 236|
|GSU3100||hisD||histidinol dehydrogenase (NCBI)||71, 203|
|GSU3124||GSU3124||iron-sulfur cluster-binding protein (VIMSS)||137, 236|
|GSU3239||cafA||ribonuclease G (NCBI)||96, 236|
|GSU3416||GSU3416||hypothetical protein (VIMSS)||115, 236|
|GSU3451||GSU3451||conserved hypothetical protein (VIMSS)||71, 201|
|GSU3463||gidB||glucose-inhibited division protein B (NCBI)||8, 71|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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If the gene is a member of a module, regulators influencing that module are also considered to regulate the gene. Regulators table list total number of regulatory influences, regulators, modules and type of the influence.
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Network inference algorithm uses de novo motif prediction for assigning genes to modules. If there are any motifs identified in the upstream region of a gene, the motif will be shown here. For each motif sequence logo, consensus and e-value will be shown.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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- 1. All genomic elements for the organism are represented as a circle and each element is separated by black tick marks. In this example chromosome and pDV represent main chromosome and plasmid for D. vulgaris Hildenborough, respectively.
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