Organism : Geobacter sulfurreducens | Module List :
Regulation information for GSU1232(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for GSU1232
|Gene||Common Name||Description||Module membership|
|GSU0097||GSU0097||pyruvate ferredoxin/flavodoxin oxidoreductase (VIMSS)||30, 230|
|GSU0118||GSU0118||hypothetical protein (VIMSS)||30, 276|
|GSU0148||alaS||alanyl-tRNA synthetase (NCBI)||30, 204|
|GSU0163||GSU0163||hypothetical protein (VIMSS)||148, 206|
|GSU0610||purD||phosphoribosylamine--glycine ligase (NCBI)||30, 231|
|GSU0611||purE-1||phosphoribosylaminoimidazole carboxylase, catalytic subunit (NCBI)||30, 231|
|GSU0617||GSU0617||NHL repeat domain protein (VIMSS)||121, 148|
|GSU0699||GSU0699||HD domain protein (NCBI)||148, 283|
|GSU0813||GSU0813||conserved hypothetical protein (VIMSS)||30, 276|
|GSU0815||GSU0815||mce-related protein (VIMSS)||30, 213|
|GSU0842||GSU0842||sensory box histidine kinase/response regulator (VIMSS)||63, 148|
|GSU0867||ubiE||ubiquinone/menaquinone biosynthesis methyltransferase UbiE, putative (NCBI)||30, 329|
|GSU0956||GSU0956||hypothetical protein (VIMSS)||105, 148|
|GSU1214||GSU1214||tetracenomycin polyketide synthesis 8-o-methyltransferase, putative (NCBI)||148, 180|
|GSU1232||GSU1232||hypothetical protein (VIMSS)||30, 148|
|GSU1275||GSU1275||conserved hypothetical protein (VIMSS)||148, 329|
|GSU1719||GSU1719||hypothetical protein (VIMSS)||30, 213|
|GSU1758||purM||phosphoribosylformylglycinamidine cyclo-ligase (VIMSS)||30, 249|
|GSU1760||cyd-5||cytochrome c3 (NCBI)||30, 248|
|GSU1878||GSU1878||sensor histidine kinase (VIMSS)||30, 148|
|GSU1913||GSU1913||glycoprotease family protein (VIMSS)||30, 277|
|GSU1927||GSU1927||sensory box/response regulator (VIMSS)||30, 106|
|GSU2017||GSU2017||conserved hypothetical protein (NCBI)||30, 221|
|GSU2331||GSU2331||conserved hypothetical protein (VIMSS)||118, 148|
|GSU2371||trpA||tryptophan synthase, alpha subunit (NCBI)||88, 148|
|GSU2547||gid||gid protein (NCBI)||7, 30|
|GSU2770||GSU2770||hypothetical protein (VIMSS)||22, 30|
|GSU2779||GSU2779||transcriptional regulator, MerR family (VIMSS)||130, 148|
|GSU2981||GSU2981||TonB-dependent receptor, putative (VIMSS)||14, 148|
|GSU3006||cobB||cobyrinic acid a,c-diamide synthase (NCBI)||30, 248|
|GSU3008||cobS||cobalamin 5'-phosphate synthase (NCBI)||30, 295|
|GSU3010||cobU||bifunctional cobalamin biosynthesis protein CobU (NCBI)||30, 89|
|GSU3162||GSU3162||L-allo-threonine aldolase (VIMSS)||148, 153|
|GSU3287||GSU3287||hydrolase, TatD family (NCBI)||30, 89|
|GSU3288||moeB||thiF family protein (NCBI)||30, 89|
|GSU3299||mmdA||carboxyl transferase domain protein (NCBI)||30, 106|
|GSU3304||GSU3304||LamB porin family protein, putative (VIMSS)||30, 276|
|GSU3306||GSU3306||hypothetical protein (VIMSS)||30, 106|
|GSU3312||hemH||ferrochelatase (NCBI)||30, 276|
|GSU3367||ispF||2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (NCBI)||84, 148|
|GSU3369||selA||L-seryl-tRNA selenium transferase (NCBI)||148, 235|
|GSU3426||GSU3426||hypothetical protein (VIMSS)||148, 180|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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