Organism : Geobacter sulfurreducens | Module List :
CoA-binding protein (VIMSS)
Functional Annotations (1)
|Predicted CoA-binding protein||cog/ cog|
Regulation information for GSU1614(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for GSU1614
|Predicted CoA-binding protein||cog/ cog|
Module neighborhood information for GSU1614
|Gene||Common Name||Description||Module membership|
|GSU0082||RluD||ribosomal large subunit pseudouridine synthase D (NCBI)||261, 326|
|GSU0496||GSU0496||efflux transporter, RND family, MFP subunit (NCBI)||20, 290|
|GSU0767||GSU0767||tia invasion determinant-related protein (VIMSS)||20, 288|
|GSU0921||rne||ribonuclease, Rne/Rng family protein (NCBI)||20, 99|
|GSU0922||GSU0922||ABC transporter, ATP-binding protein (VIMSS)||20, 283|
|GSU0923||loN-1||ATP-dependent protease La (NCBI)||20, 133|
|GSU0924||GSU0924||ABC transporter, permease protein, putative (VIMSS)||20, 133|
|GSU0926||GSU0926||mce-related protein (NCBI)||20, 95|
|GSU0927||GSU0927||peptidase, M16 family (NCBI)||20, 121|
|GSU0928||GSU0928||peptidase, M16 family (NCBI)||20, 57|
|GSU0929||GSU0929||conserved hypothetical protein (VIMSS)||20, 162|
|GSU1017||hpt||hypoxanthine phosphoribosyltransferase, putative (NCBI)||20, 77|
|GSU1024||cyd-4||cytochrome c3 (NCBI)||16, 20|
|GSU1059||sucD||succinyl-CoA synthase, alpha subunit (NCBI)||100, 326|
|GSU1161||GSU1161||efflux transporter, RND family, MFP subunit (NCBI)||310, 326|
|GSU1394||GSU1394||spore coat protein-related protein (NCBI)||20, 57|
|GSU1401||dnaE||DNA polymerase III, alpha subunit (NCBI)||20, 241|
|GSU1402||accA||acetyl-CoA carboxylase, carboxyl transferase, alpha subunit (NCBI)||20, 321|
|GSU1614||GSU1614||CoA-binding protein (VIMSS)||20, 326|
|GSU1837||GSU1837||peptidase, family M23/M37 domain protein (NCBI)||20, 46|
|GSU1875||ahcY||adenosylhomocysteinase (NCBI)||20, 46|
|GSU2035||GSU2035||hypothetical protein (NCBI)||20, 138|
|GSU2201||GSU2201||cytochrome c family protein (NCBI)||20, 125|
|GSU2302||GSU2302||trehalose-phosphatase, putative (VIMSS)||20, 189|
|GSU2303||GSU2303||Na+/H+ antiporter family protein (VIMSS)||20, 71|
|GSU2433||GSU2433||ATP-dependent protease, putative (VIMSS)||20, 49|
|GSU2483||kdpD||sensor histidine kinase KdpD (NCBI)||20, 49|
|GSU2788||GSU2788||conserved hypothetical protein (NCBI)||128, 326|
|GSU2883||GSU2883||cytochrome c family protein (VIMSS)||20, 46|
|GSU3130||GSU3130||lipoprotein, putative (VIMSS)||100, 326|
|GSU3138||GSU3138||sensor histidine kinase/response regulator (VIMSS)||100, 326|
|GSU3192||GSU3192||heat shock protein, Hsp20 family (NCBI)||104, 326|
|GSU3194||thiL||thiamine monophosphate kinase (NCBI)||128, 326|
|GSU3195||GSU3195||chemotaxis protein methyltransferase CheR,putative (VIMSS)||104, 326|
|GSU3196||GSU3196||methyl-accepting chemotaxis protein (VIMSS)||246, 326|
|GSU3197||GSU3197||purine-binding chemotaxis protein CheW, putative (VIMSS)||246, 326|
|GSU3198||cheY-7||chemotaxis protein CheY (NCBI)||189, 326|
|GSU3199||cheA-3||chemotaxis protein CheA (NCBI)||246, 326|
|GSU3200||GSU3200||chemotaxis protein, CheC family (NCBI)||100, 326|
|GSU3201||GSU3201||chemotaxis protein CheD, putative (VIMSS)||104, 326|
|GSU3202||GSU3202||hypothetical protein (VIMSS)||189, 326|
|GSU3442||GSU3442||conserved hypothetical protein (VIMSS)||167, 326|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Network inference algorithm uses de novo motif prediction for assigning genes to modules. If there are any motifs identified in the upstream region of a gene, the motif will be shown here. For each motif sequence logo, consensus and e-value will be shown.
Identification of functional enrichment for the module members is important in associating predicted motifs and regulatory influences with pathways. As described above, the network inference pipeline includes a functional enrichment module by which hypergeometric p-values are used to identify over representation of functional ontology terms among module members.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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