Organism : Geobacter sulfurreducens | Module List :
Regulation information for GSU1673(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for GSU1673
|Gene||Common Name||Description||Module membership|
|GSU0065||GSU0065||cytidine/deoxycytidylate deaminase family protein (VIMSS)||81, 200|
|GSU0103||GSU0103||sensory box histidine kinase (VIMSS)||200, 216|
|GSU0104||GSU0104||response regulator, putative (VIMSS)||200, 279|
|GSU0115||pdxA||pyridoxal phosphate biosynthetic protein PdxA (NCBI)||200, 335|
|GSU0116||GSU0116||transglycosylase (VIMSS)||95, 200|
|GSU0144||GSU0144||sensory box histidine kinase (VIMSS)||53, 85|
|GSU0304||pepN||aminopeptidase N (NCBI)||53, 290|
|GSU0358||GSU0358||iron-sulfur cluster-binding protein (VIMSS)||61, 200|
|GSU0500||typA||GTP-binding protein TypA (NCBI)||53, 320|
|GSU0642||ffh||signal recognition particle protein (NCBI)||107, 200|
|GSU0645||rimM||16S rRNA processing protein RimM (NCBI)||87, 200|
|GSU0646||trmD||tRNA (guanine-N1)-methyltransferase (NCBI)||107, 200|
|GSU0657||GSU0657||hypothetical protein (VIMSS)||53, 315|
|GSU0681||GSU0681||sensory box histidine kinase (VIMSS)||53, 85|
|GSU0807||GSU0807||apo-citrate lyase phosphoribosyl-dephospho-CoA transferase, putative (NCBI)||81, 200|
|GSU0827||GSU0827||hypothetical protein (VIMSS)||27, 53|
|GSU0829||GSU0829||heavy metal efflux pump, CzcB family (VIMSS)||27, 53|
|GSU1036||GSU1036||sensor histidine kinase (VIMSS)||53, 157|
|GSU1090||GSU1090||signal transduction protein-related protein (VIMSS)||200, 294|
|GSU1414||GSU1414||sensory box histidine kinase/response regulator (VIMSS)||53, 275|
|GSU1427||GSU1427||anti-anti-sigma factor (VIMSS)||53, 268|
|GSU1430||GSU1430||hypothetical protein (VIMSS)||53, 229|
|GSU1642||GSU1642||conserved hypothetical protein (VIMSS)||27, 53|
|GSU1673||GSU1673||hypothetical protein (VIMSS)||53, 200|
|GSU1796||GSU1796||DHH family protein (VIMSS)||200, 229|
|GSU1817||GSU1817||outer membrane lipoprotein, Slp family, putative (VIMSS)||53, 264|
|GSU1857||GSU1857||hypothetical protein (VIMSS)||53, 203|
|GSU1989||GSU1989||sigma-54 dependent DNA-binding response regulator (VIMSS)||53, 268|
|GSU1990||GSU1990||sensor histidine kinase (VIMSS)||53, 200|
|GSU2315||GSU2315||hypothetical protein (VIMSS)||200, 319|
|GSU2442||GSU2442||RelA/SpoT domain protein (NCBI)||114, 200|
|GSU2665||GSU2665||efflux transporter, RND family, MFP subunit (NCBI)||53, 244|
|GSU2666||GSU2666||transcriptional regulator, TetR family (VIMSS)||53, 244|
|GSU2668||GSU2668||hypothetical protein (VIMSS)||53, 244|
|GSU2669||GSU2669||sensor histidine kinase (VIMSS)||53, 244|
|GSU2678||hsp||heat shock protein, Hsp20 family (NCBI)||53, 200|
|GSU2692||GSU2692||immunogenic protein family protein (VIMSS)||53, 194|
|GSU2897||GSU2897||hypothetical protein (VIMSS)||162, 200|
|GSU3020||GSU3020||hexapeptide transferase family protein (VIMSS)||200, 229|
|GSU3065||ftsQ||cell division protein FtsQ (NCBI)||200, 264|
|GSU3074||murE||UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate ligase (NCBI)||200, 267|
|GSU3075||GSU3075||penicillin-binding protein (VIMSS)||200, 267|
|GSU3076||GSU3076||cell division protein FtsL, putative (NCBI)||188, 200|
|GSU3077||mraW||S-adenosyl-methyltransferase MraW (NCBI)||200, 267|
|GSU3078||GSU3078||mraZ protein, putative (NCBI)||200, 267|
|GSU3086||GSU3086||conserved hypothetical protein (VIMSS)||53, 258|
|GSU3087||GSU3087||transcriptional regulator, Sir2 family (VIMSS)||200, 324|
|GSU3088||GSU3088||ybaK/ebsC protein (VIMSS)||53, 324|
|GSU3089||rpoD||RNA polymerase sigma factor RpoD (NCBI)||53, 267|
|GSU3090||dnaG||DNA primase (NCBI)||200, 267|
|GSU3095||hisF||imidazoleglycerol phosphate synthase, cyclase subunit (NCBI)||53, 99|
|GSU3139||GSU3139||conserved hypothetical protein (VIMSS)||53, 216|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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