Organism : Geobacter sulfurreducens | Module List :
Regulation information for GSU1762(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Functional Enrichment for GSU1762
Module neighborhood information for GSU1762
|Gene||Common Name||Description||Module membership|
|GSU0096||recR||recombination protein RecR (NCBI)||32, 142|
|GSU0127||GSU0127||conserved hypothetical protein (VIMSS)||198, 201|
|GSU0174||GSU0174||acetyl-CoA hydrolase/transferase family protein (VIMSS)||32, 308|
|GSU0175||GSU0175||transcriptional regulator, TetR family (VIMSS)||32, 308|
|GSU0229||alkK||medium-chain-fatty-acid--CoA ligase (NCBI)||32, 93|
|GSU0261||GSU0261||sodium/hydrogen exchanger family protein (VIMSS)||32, 178|
|GSU0623||GSU0623||glycosyl transferase, group 2 family protein (VIMSS)||131, 201|
|GSU0632||GSU0632||conserved hypothetical protein (VIMSS)||201, 329|
|GSU0769||rarD||rarD protein (NCBI)||201, 318|
|GSU0851||GSU0851||rhomboid family protein (VIMSS)||32, 238|
|GSU0946||GSU0946||sensory box/GGDEF family protein (VIMSS)||32, 93|
|GSU0963||ntrC||sigma-54 dependent DNA-binding response regulator (NCBI)||32, 142|
|GSU0966||GSU0966||hypothetical protein (VIMSS)||32, 93|
|GSU0967||GSU0967||membrane protein, putative (VIMSS)||32, 252|
|GSU1019||GSU1019||xanthine/uracil permease family protein (VIMSS)||32, 281|
|GSU1068||GSU1068||sodium/solute symporter family protein (NCBI)||32, 142|
|GSU1069||GSU1069||conserved hypothetical protein (VIMSS)||32, 142|
|GSU1070||GSU1070||sodium/solute symporter family protein (NCBI)||32, 142|
|GSU1071||GSU1071||conserved hypothetical protein (VIMSS)||32, 142|
|GSU1196||GSU1196||hypothetical protein (VIMSS)||125, 201|
|GSU1289||cheY-3||chemotaxis protein CheY (NCBI)||32, 146|
|GSU1305||gdhA||Glu/Leu/Phe/Val dehydrogenase family protein (NCBI)||32, 122|
|GSU1345||GSU1345||RrF2 family protein (VIMSS)||201, 290|
|GSU1378||pbpE||beta-lactamase (NCBI)||69, 201|
|GSU1380||feoB-1||ferrous iron transport protein B (NCBI)||201, 318|
|GSU1382||GSU1382||iron-dependent repressor, putative (VIMSS)||201, 318|
|GSU1403||rluB||ribosomal large subunit pseudouridine synthase B (NCBI)||46, 201|
|GSU1549||GSU1549||lipoprotein, putative (VIMSS)||84, 201|
|GSU1575||GSU1575||hypothetical protein (VIMSS)||32, 308|
|GSU1762||GSU1762||TPR domain protein (VIMSS)||32, 201|
|GSU1763||GSU1763||DnaJ domain protein (VIMSS)||201, 291|
|GSU2024||GSU2024||hypothetical protein (VIMSS)||201, 221|
|GSU2048||GSU2048||hypothetical protein (NCBI)||201, 218|
|GSU2066||glgP||glycogen phosphorylase (NCBI)||88, 201|
|GSU2194||guaA||GMP synthase (NCBI)||51, 201|
|GSU2221||exeA||general secretion pathway protein-related protein (NCBI)||201, 291|
|GSU2224||GSU2224||response regulator (VIMSS)||51, 201|
|GSU2240||galE||UDP-glucose 4-epimerase (NCBI)||131, 201|
|GSU2301||GSU2301||hypothetical protein (VIMSS)||201, 203|
|GSU2352||GSU2352||sodium/solute symporter family protein (NCBI)||32, 122|
|GSU2353||GSU2353||conserved hypothetical protein (VIMSS)||32, 70|
|GSU2357||GSU2357||conserved hypothetical protein (VIMSS)||32, 142|
|GSU2363||GSU2363||chloride channel family protein, putative (VIMSS)||32, 281|
|GSU2462||metA||homoserine O-acetyltransferase (NCBI)||32, 93|
|GSU2490||GSU2490||oxalate/formate antiporter, putative (VIMSS)||32, 142|
|GSU2605||cmk||cytidylate kinase (NCBI)||76, 201|
|GSU2706||GSU2706||phosphate acetyltransferase (VIMSS)||32, 142|
|GSU2944||GSU2944||(R)-2-hydroxyglutaryl-CoA dehydratase alpha-subunit, putative (VIMSS)||32, 93|
|GSU2945||GSU2945||(R)-2-hydroxyglutaryl-CoA dehydratase activator, putative (VIMSS)||32, 93|
|GSU2946||tcrA||DNA-binding heavy metal response regulator (NCBI)||76, 201|
|GSU2982||GSU2982||TonB dependent receptor, putative (VIMSS)||32, 93|
|GSU3081||GSU3081||conserved hypothetical protein, truncation (NCBI)||174, 201|
|GSU3146||moaA||molybdenum cofactor biosynthesis protein A, putative (NCBI)||201, 318|
|GSU3147||mobB||molybdopterin-guanine dinucleotide biosynthesis protein MobB (NCBI)||164, 201|
|GSU3376||pleD||GGDEF/response regulator receiver domain protein (NCBI)||201, 221|
|GSU3451||GSU3451||conserved hypothetical protein (VIMSS)||71, 201|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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CircVisOur circular module explorer is adapted from visquick originally developed by Dick Kreisberg of Ilya Shmulevich lab at ISB for The Cancer Genome Atlas. We use simplified version of visquick to display distribution of module members and their interactions across the genome. This view provides summary of regulation information for a gene. The main components are;
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