Organism : Geobacter sulfurreducens | Module List :
Regulation information for GSU1867(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for GSU1867
|Gene||Common Name||Description||Module membership|
|GSU0024||GSU0024||OmpA domain protein (VIMSS)||228, 258|
|GSU0098||GSU0098||MglB protein (VIMSS)||114, 264|
|GSU0153||argG||argininosuccinate synthase (NCBI)||160, 258|
|GSU0224||GSU0224||conserved hypothetical protein (VIMSS)||40, 258|
|GSU0317||GSU0317||conserved hypothetical protein (VIMSS)||60, 258|
|GSU0388||GSU0388||conserved hypothetical protein (NCBI)||89, 264|
|GSU0476||GSU0476||conserved hypothetical protein (VIMSS)||77, 264|
|GSU0780||GSU0780||formate dehydrogenase accessory protein FdhD (VIMSS)||184, 264|
|GSU0850||GSU0850||hypothetical protein (NCBI)||258, 289|
|GSU0981||GSU0981||conserved hypothetical protein (VIMSS)||48, 258|
|GSU0988||GSU0988||conserved hypothetical protein (VIMSS)||48, 258|
|GSU1117||GSU1117||response regulator (VIMSS)||94, 264|
|GSU1118||GSU1118||universal stress protein family (VIMSS)||264, 276|
|GSU1119||GSU1119||sensor histidine kinase/response regulator (VIMSS)||94, 264|
|GSU1316||GSU1316||response regulator (VIMSS)||160, 258|
|GSU1610||GSU1610||efflux transporter, RND family, MFP subunit (NCBI)||113, 258|
|GSU1639||GSU1639||Rrf2 family protein (NCBI)||264, 315|
|GSU1640||cydA||cytochrome d ubiquinol oxidase, subunit I (NCBI)||264, 315|
|GSU1641||cydB||cytochrome d ubiquinol oxidase, subunit II (NCBI)||264, 315|
|GSU1766||xseB||exodeoxyribonuclease VII, small subunit (NCBI)||113, 258|
|GSU1817||GSU1817||outer membrane lipoprotein, Slp family, putative (VIMSS)||53, 264|
|GSU1867||GSU1867||hypothetical protein (VIMSS)||258, 264|
|GSU1949||GSU1949||hypothetical protein (VIMSS)||65, 264|
|GSU1992||GSU1992||transcriptional regulator, Crp/Fnr family (VIMSS)||264, 279|
|GSU2044||GSU2044||sensory box/GGDEF family protein (VIMSS)||100, 264|
|GSU2294||GSU2294||cytochrome c family protein (NCBI)||250, 258|
|GSU2451||GSU2451||PilB-related protein (VIMSS)||40, 258|
|GSU2458||GSU2458||penicillin-binding protein, putative (NCBI)||160, 258|
|GSU2496||GSU2496||hypothetical protein (VIMSS)||91, 258|
|GSU2603||rpsA||ribosomal protein S1 (NCBI)||258, 262|
|GSU2655||pdhB||pyruvate dehydrogenase complex E1 component, beta subunit (NCBI)||240, 258|
|GSU2730||GSU2730||hypothetical protein (NCBI)||113, 264|
|GSU2969||pleD||sensory box/GGDEF family protein (NCBI)||26, 258|
|GSU3063||ftsZ||cell division protein FtsZ (NCBI)||230, 264|
|GSU3065||ftsQ||cell division protein FtsQ (NCBI)||200, 264|
|GSU3066||ddl||D-alanine--D-alanine ligase (NCBI)||35, 264|
|GSU3067||murB||UDP-N-acetylenolpyruvoylglucosamine reductase (NCBI)||94, 264|
|GSU3068||murC||UDP-N-acetylmuramate--alanine ligase (NCBI)||94, 264|
|GSU3069||murG||UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (NCBI)||140, 264|
|GSU3070||GSU3070||cell division protein, rodA/ftsW/spoVE family (VIMSS)||60, 264|
|GSU3071||murD||UDP-N-acetylmuramoylalanine--D-glutamate ligase (NCBI)||95, 264|
|GSU3072||mraY||phospho-N-acetylmuramoyl-pentapeptide-transferase (NCBI)||140, 264|
|GSU3086||GSU3086||conserved hypothetical protein (VIMSS)||53, 258|
|GSU3106||GSU3106||conserved hypothetical protein (NCBI)||128, 258|
|GSU3158||cysM||cysteine synthase b (VIMSS)||140, 258|
|GSU3235||rpmA||ribosomal protein L27 (NCBI)||58, 258|
|GSU3238||GSU3238||Rieske 2Fe-2S family protein (VIMSS)||95, 264|
|GSU3240||GSU3240||radical SAM domain protein (NCBI)||100, 264|
|GSU3246||GSU3246||thioredoxin peroxidase (VIMSS)||264, 315|
|GSU3294||GSU3294||rubredoxin-oxygen oxidoreductase, putative (VIMSS)||11, 258|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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