Organism : Geobacter sulfurreducens | Module List :
Regulation information for GSU2641(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for GSU2641
|Gene||Common Name||Description||Module membership|
|GSU0039||GSU0039||hypothetical protein (VIMSS)||66, 124|
|GSU0061||GSU0061||hypothetical protein (VIMSS)||9, 95|
|GSU0116||GSU0116||transglycosylase (VIMSS)||95, 200|
|GSU0214||GSU0214||conserved hypothetical protein (VIMSS)||6, 95|
|GSU0357||GSU0357||cytochrome c family protein (VIMSS)||6, 95|
|GSU0533||GSU0533||cytochrome c family protein, putative (NCBI)||54, 95|
|GSU0542||GSU0542||GGDEF domain protein (NCBI)||9, 66|
|GSU0598||GSU0598||sigma-54 dependent DNA-binding response regulator (VIMSS)||66, 269|
|GSU0640||GSU0640||conserved hypothetical protein (VIMSS)||95, 158|
|GSU0707||sugE||sugE protein (NCBI)||95, 234|
|GSU0757||GSU0757||lipoprotein, putative (VIMSS)||66, 331|
|GSU0806||citG||ATP:dephospho-CoA triphosphoribosyl transferase (NCBI)||95, 133|
|GSU0843||GSU0843||NADH oxidase, putative (VIMSS)||9, 95|
|GSU0845||GSU0845||Rieske 2Fe-2S family protein (VIMSS)||9, 95|
|GSU0926||GSU0926||mce-related protein (NCBI)||20, 95|
|GSU1251||GSU1251||BNR repeat domain protein (VIMSS)||66, 104|
|GSU1252||GSU1252||conserved domain protein (NCBI)||66, 104|
|GSU1253||GSU1253||hypothetical protein (VIMSS)||66, 104|
|GSU1255||GSU1255||conserved hypothetical protein (NCBI)||95, 104|
|GSU1256||GSU1256||conserved domain protein (NCBI)||6, 95|
|GSU1677||GSU1677||AMP-binding enzyme/acyltransferase (NCBI)||57, 66|
|GSU1844||GSU1844||IPT/TIG domain protein, putative (VIMSS)||9, 95|
|GSU1853||GSU1853||membrane protein, putative (VIMSS)||66, 124|
|GSU1854||GSU1854||UDP-glucose/GDP-mannose dehydrogenase family protein (VIMSS)||66, 124|
|GSU1855||GSU1855||capsule polysaccharide export protein, putative (VIMSS)||66, 124|
|GSU2131||GSU2131||hypothetical protein (VIMSS)||51, 66|
|GSU2199||GSU2199||conserved hypothetical protein (VIMSS)||95, 273|
|GSU2499||GSU2499||hypothetical protein (VIMSS)||66, 341|
|GSU2501||GSU2501||cytochrome c family protein (NCBI)||66, 341|
|GSU2503||GSU2503||cytochrome c family protein (NCBI)||6, 66|
|GSU2505||GSU2505||NHL repeat domain protein (VIMSS)||66, 341|
|GSU2509||GSU2509||glycosyl transferase, group 2 family protein (VIMSS)||9, 95|
|GSU2515||GSU2515||cytochrome c family protein, putative (NCBI)||9, 95|
|GSU2561||GSU2561||conserved domain protein (NCBI)||95, 193|
|GSU2640||GSU2640||hypothetical protein (VIMSS)||66, 95|
|GSU2641||GSU2641||hypothetical protein (VIMSS)||66, 95|
|GSU2735||GSU2735||transcriptional regulator, TetR family (NCBI)||65, 66|
|GSU2741||GSU2741||transcriptional regulator, TetR family (VIMSS)||6, 66|
|GSU2763||GSU2763||conserved hypothetical protein (VIMSS)||4, 66|
|GSU2775||GSU2775||hypothetical protein (VIMSS)||9, 95|
|GSU2787||GSU2787||transcriptional regulator, LysR family (VIMSS)||95, 224|
|GSU2895||GSU2895||hypothetical protein (VIMSS)||6, 66|
|GSU2896||GSU2896||ankyrin-related protein (VIMSS)||6, 95|
|GSU3048||flgH||flagellar L-ring protein FlgH (NCBI)||95, 186|
|GSU3071||murD||UDP-N-acetylmuramoylalanine--D-glutamate ligase (NCBI)||95, 264|
|GSU3128||GSU3128||hypothetical protein (VIMSS)||95, 183|
|GSU3238||GSU3238||Rieske 2Fe-2S family protein (VIMSS)||95, 264|
|GSU3313||GSU3313||thiolase, putative (NCBI)||9, 66|
|GSU3420||GSU3420||lipid A biosynthesis lauroyl acyltransferase, putative (VIMSS)||9, 66|
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If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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