Organism : Geobacter sulfurreducens | Module List :
Regulation information for GSU3012(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for GSU3012
|Gene||Common Name||Description||Module membership|
|GSU0057||GSU0057||CRISPR-associated protein Cas1/Cas4 (NCBI)||157, 195|
|GSU0058||GSU0058||CRISPR-associated protein Cas2, putative (NCBI)||157, 195|
|GSU0122||GSU0122||nickel-dependent hydrogenase, large subunit (VIMSS)||21, 157|
|GSU0132||GSU0132||conserved hypothetical protein (VIMSS)||155, 157|
|GSU0134||GSU0134||metallo-beta-lactamase family protein (NCBI)||38, 59|
|GSU0178||GSU0178||conserved hypothetical protein (VIMSS)||157, 202|
|GSU0216||GSU0216||conserved hypothetical protein (VIMSS)||38, 241|
|GSU0395||GSU0395||conserved hypothetical protein (VIMSS)||94, 157|
|GSU0583||GSU0583||methyl-accepting chemotaxis protein (VIMSS)||100, 157|
|GSU0593||GSU0593||conserved domain protein (NCBI)||38, 241|
|GSU0594||GSU0594||cytochrome c family protein (NCBI)||38, 241|
|GSU0692||GSU0692||carbohydrate kinase, PfkB family (VIMSS)||9, 157|
|GSU0693||GSU0693||sensory box histidine kinase (VIMSS)||103, 157|
|GSU0760||GSU0760||hypothetical protein (VIMSS)||151, 157|
|GSU0849||GSU0849||conserved hypothetical protein (VIMSS)||21, 157|
|GSU0942||suhB||inositol-1-monophosphatase (NCBI)||157, 193|
|GSU1036||GSU1036||sensor histidine kinase (VIMSS)||53, 157|
|GSU1066||GSU1066||hypothetical protein (NCBI)||4, 157|
|GSU1185||GSU1185||conserved hypothetical protein (VIMSS)||41, 157|
|GSU1299||cheW||purine-binding chemotaxis protein CheW (NCBI)||59, 157|
|GSU1415||GSU1415||response regulator (VIMSS)||21, 157|
|GSU1452||GSU1452||RNA methyltransferase, TrmA family (VIMSS)||38, 203|
|GSU1685||GSU1685||HD domain protein (NCBI)||21, 38|
|GSU1699||GSU1699||TonB-dependent receptor, putative (VIMSS)||38, 321|
|GSU1944||GSU1944||hypothetical protein (VIMSS)||38, 241|
|GSU2184||GSU2184||polyA polymerase family protein (NCBI)||38, 321|
|GSU2562||sixA||phosphohistidine phosphatase SixA (NCBI)||140, 157|
|GSU2689||GSU2689||hypothetical protein (VIMSS)||113, 157|
|GSU2791||GSU2791||hypothetical protein (RefSeq)||65, 157|
|GSU2920||GSU2920||hypothetical protein (VIMSS)||38, 321|
|GSU2921||metH||5-methyltetrahydrofolate-homocysteine methyltransferase, truncation (NCBI)||38, 203|
|GSU2922||GSU2922||hypothetical protein (VIMSS)||38, 261|
|GSU2923||murI||glutamate racemase (NCBI)||38, 203|
|GSU2924||GSU2924||hypothetical protein (VIMSS)||38, 203|
|GSU2925||GSU2925||conserved hypothetical protein (VIMSS)||38, 203|
|GSU2926||GSU2926||(R)-2-hydroxyglutaryl-CoA dehydratase activator, putative (VIMSS)||38, 203|
|GSU3012||GSU3012||hypothetical protein (VIMSS)||38, 157|
|GSU3099||hisC||histidinol-phosphate aminotransferase (NCBI)||38, 203|
|GSU3295||GSU3295||conserved hypothetical protein (VIMSS)||38, 321|
|GSU3296||GSU3296||glycolate oxidase subunit GlcD, putative (VIMSS)||38, 321|
|GSU3297||GSU3297||iron-sulfur cluster-binding protein (NCBI)||38, 321|
|GSU3324||GSU3324||transcriptional regulator, Cro/CI family (VIMSS)||13, 157|
|GSU3325||uvrA||excinuclease ABC, A subunit (NCBI)||38, 266|
|GSU3345||GSU3345||hypothetical protein (VIMSS)||113, 157|
|GSU3414||GSU3414||hypothetical protein (VIMSS)||41, 157|
|GSU3415||GSU3415||radical SAM domain protein/B12 binding domain protein (NCBI)||21, 157|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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