Organism : Geobacter sulfurreducens | Module List :
Regulation information for GSU3018(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for GSU3018
|Gene||Common Name||Description||Module membership|
|GSU0040||GSU0040||conserved hypothetical protein (VIMSS)||137, 257|
|GSU0190||GSU0190||hypothetical protein (VIMSS)||109, 257|
|GSU0222||GSU0222||cytochrome c oxidase, subunit II (VIMSS)||99, 257|
|GSU0223||GSU0223||protoheme IX farnesyl transferase, putative (VIMSS)||257, 300|
|GSU0359||GSU0359||sensory box protein/sigma-54 dependent transcriptional regulator (VIMSS)||122, 257|
|GSU0385||GSU0385||NADH dehydrogenase subunit, putative (VIMSS)||243, 257|
|GSU0719||GSU0719||hypothetical protein (VIMSS)||27, 311|
|GSU0752||GSU0752||transporter, putative (VIMSS)||216, 257|
|GSU0771||GSU0771||alcohol dehydrogenase, zinc-containing (VIMSS)||16, 257|
|GSU0773||GSU0773||multidrug resistance protein, putative (VIMSS)||16, 257|
|GSU0774||GSU0774||iron-sulfur cluster-binding protein (VIMSS)||109, 257|
|GSU0827||GSU0827||hypothetical protein (VIMSS)||27, 53|
|GSU0828||GSU0828||metal ion efflux outer membrane protein family protein, putative (VIMSS)||27, 92|
|GSU0829||GSU0829||heavy metal efflux pump, CzcB family (VIMSS)||27, 53|
|GSU0830||GSU0830||heavy metal efflux pump, CzcA family (VIMSS)||27, 155|
|GSU0831||GSU0831||nitrogen regulatory protein P-II, putative (VIMSS)||27, 180|
|GSU0901||fragment||conserved domain protein (NCBI)||257, 287|
|GSU1307||ftn||ferritin (NCBI)||27, 85|
|GSU1642||GSU1642||conserved hypothetical protein (VIMSS)||27, 53|
|GSU1646||GSU1646||lipoprotein, putative (VIMSS)||27, 172|
|GSU1661||GSU1661||hypothetical protein (VIMSS)||27, 118|
|GSU2314||GSU2314||sensory box histidine kinase/response regulator (VIMSS)||155, 257|
|GSU2316||GSU2316||mechanosensitive ion channel family protein (NCBI)||140, 257|
|GSU2322||GSU2322||hypothetical protein (VIMSS)||13, 27|
|GSU2324||GSU2324||hypothetical protein (VIMSS)||27, 175|
|GSU2325||GSU2325||cation-transport ATPase, E1-E2 family (VIMSS)||27, 261|
|GSU2481||kdpB||potassium-transporting ATPase, B subunit (NCBI)||96, 257|
|GSU2484||kdpE||DNA-binding response regulator KdpE (NCBI)||96, 257|
|GSU2486||GSU2486||conserved hypothetical protein (VIMSS)||257, 311|
|GSU2595||GSU2595||hypothetical protein (VIMSS)||27, 295|
|GSU2630||GSU2630||serine/threonine protein phosphatase, putative (VIMSS)||155, 257|
|GSU2653||GSU2653||MATE efflux family protein (VIMSS)||27, 34|
|GSU2654||pdhA||pyruvate dehydrogenase complex E1 component, alpha subunit (NCBI)||27, 109|
|GSU2691||GSU2691||conserved hypothetical protein (VIMSS)||27, 85|
|GSU2902||GSU2902||TPR domain protein (VIMSS)||109, 257|
|GSU2904||GSU2904||hypothetical protein (NCBI)||186, 257|
|GSU2905||GSU2905||radical SAM domain protein (NCBI)||166, 257|
|GSU3018||GSU3018||conserved hypothetical protein (VIMSS)||27, 257|
|GSU3019||GSU3019||dehydrogenase, E1 component, alpha and beta subunits (NCBI)||27, 96|
|GSU3021||GSU3021||DegT/DnrJ/EryC1/StrS family protein (VIMSS)||27, 138|
|GSU3022||GSU3022||hypothetical protein (NCBI)||27, 138|
|GSU3024||GSU3024||hypothetical protein (VIMSS)||27, 138|
|GSU3025||GSU3025||heptosyltransferase family protein (VIMSS)||27, 272|
|GSU3122||GSU3122||metallo-beta-lactamase family protein (NCBI)||137, 257|
|GSU3126||GSU3126||oxidoreductase, aldo/keto reductase family (VIMSS)||137, 257|
|GSU3311||GSU3311||hypothetical protein (VIMSS)||166, 257|
|GSU3326||GSU3326||conserved hypothetical protein (VIMSS)||27, 311|
|GSU3327||GSU3327||conserved hypothetical protein (VIMSS)||27, 85|
|GSU3344||GSU3344||hypothetical protein (VIMSS)||27, 279|
|GSU3363||GSU3363||sigma-54 dependent transcriptional regulator, Fis family (VIMSS)||109, 257|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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If the gene is a member of a module, regulators influencing that module are also considered to regulate the gene. Regulators table list total number of regulatory influences, regulators, modules and type of the influence.
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