Organism : Halobacterium salinarum NRC-1 | Module List :
Regulation information for VNG1300H(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for VNG1300H
|Gene||Common Name||Description||Module membership|
|VNG0029H||hypothetical protein VNG0029H||285|
|VNG0119H||hypothetical protein VNG0119H||117, 264|
|VNG0121H||hypothetical protein VNG0121H||117, 268|
|VNG0231C||hypothetical protein VNG0231C||186, 285|
|VNG0339H||hypothetical protein VNG0339H||285|
|VNG0386Gm||trpG2||anthranilate synthase subunit beta||190, 285|
|VNG0503C||hypothetical protein VNG0503C||285, 299|
|VNG0613H||hypothetical protein VNG0613H||285|
|VNG0624H||hypothetical protein VNG0624H||117|
|VNG0652H||hypothetical protein VNG0652H||117|
|VNG0718C||hypothetical protein VNG0718C||285|
|VNG0736G||kinA2||signal-transducing histidine kinase-like protein||117|
|VNG0808G||gabD||succinate-semialdehyde dehydrogenase||258, 285|
|VNG0989C||hypothetical protein VNG0989C||285|
|VNG1179C||hypothetical protein VNG1179C||117, 285|
|VNG1191Gm||ACD3||Acyl-CoA dehydrogenase||116, 285|
|VNG1205C||N-ethylammeline chlorohydrolase||179, 285|
|VNG1207C||hypothetical protein VNG1207C||271, 285|
|VNG1218C||hypothetical protein VNG1218C||251, 285|
|VNG1219G||urk||uridine kinase||108, 285|
|VNG1235C||hypothetical protein VNG1235C||131, 285|
|VNG1239H||hypothetical protein VNG1239H||117, 230|
|VNG1247G||ybhF||ABC-type transport protein||95, 285|
|VNG1256G||ribG||5-amino-6-(5-phosphoribosylamino)uracil reductase||251, 285|
|VNG1282G||trkA5||TRK potassium uptake system protein||115, 285|
|VNG1299C||hypothetical protein VNG1299C||53, 285|
|VNG1300H||hypothetical protein VNG1300H||117, 285|
|VNG1303C||hypothetical protein VNG1303C||265, 285, 288|
|VNG1311G||alkA||3-methyladenine DNA glycosylase||246, 285|
|VNG1330H||hypothetical protein VNG1330H||166, 285|
|VNG1340C||hypothetical protein VNG1340C||91, 285|
|VNG1342Gm||flavin-dependent oxidoreductase||264, 285|
|VNG1352G||gatB1||glutamyl-tRNA(Gln) amidotransferase subunit E||190, 285|
|VNG1360H||hypothetical protein VNG1360H||140, 285|
|VNG1576G||cbiP||cobyric acid synthase||117, 210|
|VNG1641H||hypothetical protein VNG1641H||117, 300|
|VNG1832H||hypothetical protein VNG1832H||117|
|VNG1919H||hypothetical protein VNG1919H||285|
|VNG1978H||hypothetical protein VNG1978H||117, 213|
|VNG2075C||hypothetical protein VNG2075C||117|
|VNG2315H||hypothetical protein VNG2315H||117|
|VNG2404G||dip1||DNA damage-inducible protein||117|
|VNG2419C||hypothetical protein VNG2419C||285|
|VNG2566H||hypothetical protein VNG2566H||117, 288|
|VNG2569H||hypothetical protein VNG2569H||117|
|VNG6166H||hypothetical protein VNG6166H||117|
|VNG6323H||hypothetical protein VNG6323H||117, 168, 178|
|VNG6326G||trp6||daunorubicin resistance ABC transporter ATP-binding protein||117, 201, 224|
|VNG6346H||hypothetical protein VNG6346H||117, 176, 196, 219|
|VNG6373G||phrH||PhiH1 repressor-like protein||107, 117|
|VNG6387H||hypothetical protein VNG6387H||117, 297|
|VNG6429H||hypothetical protein VNG6429H||117|
|VNG6430C||hypothetical protein VNG6430C||117|
|VNG7095||repI||replication protein RepI||117|
|VNG7108||hypothetical protein VNG7108||117, 147|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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If the gene is a member of a module, regulators influencing that module are also considered to regulate the gene. Regulators table list total number of regulatory influences, regulators, modules and type of the influence.
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Network inference algorithm uses de novo motif prediction for assigning genes to modules. If there are any motifs identified in the upstream region of a gene, the motif will be shown here. For each motif sequence logo, consensus and e-value will be shown.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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