PITA_112 megaCluster: 11 Residual: 0.12

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
PITA_112 11 0.12 15 0 0.975576 0

Members

Displaying 1 - 23 of 23
11532 alcohol dehydrogenase 5 (class III), chi polypeptide

Details for - - alcohol dehydrogenase 5 (class III), chi polypeptide

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 11532

Tuberculist Genomic Region

11891 RAB27A, member RAS oncogene family

Details for - - RAB27A, member RAS oncogene family

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 11891

Tuberculist Genomic Region

12039 branched chain ketoacid dehydrogenase E1, alpha polypeptide

Details for - - branched chain ketoacid dehydrogenase E1, alpha polypeptide

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12039

Tuberculist Genomic Region

13480 dolichol-phosphate (beta-D) mannosyltransferase 1

Details for RP23-391M18.1 - dolichol-phosphate (beta-D) mannosyltransferase 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 13480

Tuberculist Genomic Region

18247 ornithine decarboxylase antizyme 2

Details for - - ornithine decarboxylase antizyme 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 18247

Tuberculist Genomic Region

52683 non-SMC condensin II complex, subunit H2

Details for - - non-SMC condensin II complex, subunit H2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 52683

Tuberculist Genomic Region

54638 coiled-coil domain containing 22

Details for - - coiled-coil domain containing 22

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 54638

Tuberculist Genomic Region

66191 immediate early response 3 interacting protein 1

Details for - - immediate early response 3 interacting protein 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66191

Tuberculist Genomic Region

67707 mitochondrial ribosomal protein L24

Details for - - mitochondrial ribosomal protein L24

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67707

Tuberculist Genomic Region

68080 GPN-loop GTPase 3

Details for - - GPN-loop GTPase 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68080

Tuberculist Genomic Region

70356 suppression of tumorigenicity 13

Details for - - suppression of tumorigenicity 13

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 70356

Tuberculist Genomic Region

71881 adipocyte plasma membrane associated protein

Details for RP23-156P22.2 - adipocyte plasma membrane associated protein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 71881

Tuberculist Genomic Region

72634 tudor and KH domain containing protein

Details for - - tudor and KH domain containing protein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 72634

Tuberculist Genomic Region

80280 CDK5 regulatory subunit associated protein 3

Details for RP23-353J21.7 - CDK5 regulatory subunit associated protein 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 80280

Tuberculist Genomic Region

107197 expressed sequence AI462493

Details for - - expressed sequence AI462493

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 107197

Tuberculist Genomic Region

15468 protein arginine N-methyltransferase 2

Details for - - protein arginine N-methyltransferase 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 15468

Tuberculist Genomic Region

227197 NADH dehydrogenase (ubiquinone) Fe-S protein 1

Details for - - NADH dehydrogenase (ubiquinone) Fe-S protein 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 227197

Tuberculist Genomic Region

52713 coiled-coil domain containing 59

Details for - - coiled-coil domain containing 59

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 52713

Tuberculist Genomic Region

53317 pleiotropic regulator 1, PRL1 homolog (Arabidopsis)

Details for - - pleiotropic regulator 1, PRL1 homolog (Arabidopsis)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 53317

Tuberculist Genomic Region

56794 2-hydroxyacyl-CoA lyase 1

Details for - - 2-hydroxyacyl-CoA lyase 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 56794

Tuberculist Genomic Region

66154 transmembrane protein 14C

Details for - - transmembrane protein 14C

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66154

Tuberculist Genomic Region

67151 proteasome (prosome, macropain) 26S subunit, non-ATPase, 9

Details for - - proteasome (prosome, macropain) 26S subunit, non-ATPase, 9

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67151

Tuberculist Genomic Region

68202 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 5

Details for - - NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 5

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68202

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
V_SP1_Q4_01_M00932 1 0

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
0.29 TTTWYTWATTTT NA 3.6 CCGCYTCCNSC NA

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
1.42 CCGCGT NA 1.63 CGTTTCGG NA

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.6 CGTCGT NA NA 0.86 CCGACGTA NA NA

3p UTR PITA

miRNAs percTargets pValue
NA

3p UTR TargetScan

miRNAs percTargets pValue
NA

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