PITA_116 megaCluster: 3 Residual: 0.28

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
PITA_116 3 0.28 15 0 0.846658 0

Members

Displaying 1 - 44 of 44
100504054 predicted gene, 20035

Details for - - predicted gene, 20035

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100504054

Tuberculist Genomic Region

20773 serine palmitoyltransferase, long chain base subunit 2

Details for - - serine palmitoyltransferase, long chain base subunit 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20773

Tuberculist Genomic Region

213811 cDNA sequence BC002059

Details for - - cDNA sequence BC002059

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 213811

Tuberculist Genomic Region

21857 tissue inhibitor of metalloproteinase 1

Details for RP23-132C19.3 - tissue inhibitor of metalloproteinase 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 21857

Tuberculist Genomic Region

231713 N(alpha)-acetyltransferase 25, NatB auxiliary subunit

Details for - - N(alpha)-acetyltransferase 25, NatB auxiliary subunit

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 231713

Tuberculist Genomic Region

30940 ubiquitin specific peptidase 25

Details for - - ubiquitin specific peptidase 25

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 30940

Tuberculist Genomic Region

338362 uronyl-2-sulfotransferase

Details for - - uronyl-2-sulfotransferase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 338362

Tuberculist Genomic Region

387168 microRNA 150

Details for - - microRNA 150

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 387168

Tuberculist Genomic Region

65963 transmembrane protein 176B

Details for - - transmembrane protein 176B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 65963

Tuberculist Genomic Region

66058 transmembrane protein 176A

Details for - - transmembrane protein 176A

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66058

Tuberculist Genomic Region

68836 mitochondrial ribosomal protein L52

Details for - - mitochondrial ribosomal protein L52

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68836

Tuberculist Genomic Region

69664 keratin associated protein 1-5

Details for RP23-272C1.5 - keratin associated protein 1-5

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 69664

Tuberculist Genomic Region

71398 RIKEN cDNA 5430427O19 gene

Details for RP23-311G7.1 - RIKEN cDNA 5430427O19 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 71398

Tuberculist Genomic Region

76338 RAB2B, member RAS oncogene family

Details for - - RAB2B, member RAS oncogene family

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 76338

Tuberculist Genomic Region

12393 runt related transcription factor 2

Details for - - runt related transcription factor 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12393

Tuberculist Genomic Region

13660 EH-domain containing 1

Details for - - EH-domain containing 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 13660

Tuberculist Genomic Region

13713 ELK3, member of ETS oncogene family

Details for - - ELK3, member of ETS oncogene family

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 13713

Tuberculist Genomic Region

14726 podoplanin

Details for RP23-348F1.2 - podoplanin

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14726

Tuberculist Genomic Region

15902 inhibitor of DNA binding 2

Details for - - inhibitor of DNA binding 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 15902

Tuberculist Genomic Region

18036 nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, beta

Details for - - nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, beta

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 18036

Tuberculist Genomic Region

226976 KAT8 regulatory NSL complex subunit 3

Details for - - KAT8 regulatory NSL complex subunit 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 226976

Tuberculist Genomic Region

23983 poly(rC) binding protein 1

Details for - - poly(rC) binding protein 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 23983

Tuberculist Genomic Region

258265 olfactory receptor 1333

Details for - - olfactory receptor 1333

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 258265

Tuberculist Genomic Region

320705 BEN domain containing 6

Details for - - BEN domain containing 6

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 320705

Tuberculist Genomic Region

330256 predicted gene, 20559

Details for - - predicted gene, 20559

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 330256

Tuberculist Genomic Region

545205 olfactory receptor 111

Details for - - olfactory receptor 111

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 545205

Tuberculist Genomic Region

57753 nucleolar complex associated 3 homolog (S. cerevisiae)

Details for - - nucleolar complex associated 3 homolog (S. cerevisiae)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 57753

Tuberculist Genomic Region

723849 microRNA 34b

Details for - - microRNA 34b

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 723849

Tuberculist Genomic Region

74155 ERBB receptor feedback inhibitor 1

Details for RP23-272N19.4 - ERBB receptor feedback inhibitor 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 74155

Tuberculist Genomic Region

74178 serine/threonine kinase 40

Details for RP23-365D10.1 - serine/threonine kinase 40

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 74178

Tuberculist Genomic Region

16181 interleukin 1 receptor antagonist

Details for RP23-218B17.2 - interleukin 1 receptor antagonist

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16181

Tuberculist Genomic Region

234839 piezo-type mechanosensitive ion channel component 1

Details for - - piezo-type mechanosensitive ion channel component 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 234839

Tuberculist Genomic Region

108960 interleukin-1 receptor-associated kinase 2

Details for - - interleukin-1 receptor-associated kinase 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 108960

Tuberculist Genomic Region

114644 solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3

Details for RP23-395E18.3 - solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 114644

Tuberculist Genomic Region

12363 caspase 4, apoptosis-related cysteine peptidase

Details for - - caspase 4, apoptosis-related cysteine peptidase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12363

Tuberculist Genomic Region

14747 chemokine-like receptor 1

Details for - - chemokine-like receptor 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14747

Tuberculist Genomic Region

19663 RNA binding protein gene with multiple splicing

Details for - - RNA binding protein gene with multiple splicing

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 19663

Tuberculist Genomic Region

269966 nucleoporin 98

Details for - - nucleoporin 98

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 269966

Tuberculist Genomic Region

399558 fibronectin leucine rich transmembrane protein 2

Details for - - fibronectin leucine rich transmembrane protein 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 399558

Tuberculist Genomic Region

67712 solute carrier family 25, member 37

Details for - - solute carrier family 25, member 37

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67712

Tuberculist Genomic Region

77987 activating signal cointegrator 1 complex subunit 3

Details for - - activating signal cointegrator 1 complex subunit 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 77987

Tuberculist Genomic Region

225028 mitogen-activated protein kinase kinase kinase kinase 3

Details for - - mitogen-activated protein kinase kinase kinase kinase 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 225028

Tuberculist Genomic Region

66102 chemokine (C-X-C motif) ligand 16

Details for DN-491F10.6 - chemokine (C-X-C motif) ligand 16

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66102

Tuberculist Genomic Region

16365 immunoresponsive gene 1

Details for - - immunoresponsive gene 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16365

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
V_NFKAPPAB65_01_M00052 0.342105 0.0000158

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
0.0000000011 AAAAAAAAAAAA NA 9800 TCTTYCTCTST NA

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
0.88 GCGACC NA 1.07 ACCCGACG NA

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.54 CCNCGGGG NA NA NA NA NA

3p UTR PITA

miRNAs percTargets pValue
NA

3p UTR TargetScan

miRNAs percTargets pValue
NA

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