PITA_8 megaCluster: 7 Residual: 0.23

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
PITA_8 7 0.23 15 0 0.89655 0

Members

Displaying 1 - 33 of 33
100039740 ribosomal protein S18 pseudogene

Details for - - ribosomal protein S18 pseudogene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100039740

Tuberculist Genomic Region

11409 acyl-Coenzyme A dehydrogenase, short chain

Details for - - acyl-Coenzyme A dehydrogenase, short chain

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 11409

Tuberculist Genomic Region

114143 ATPase, H+ transporting, lysosomal V0 subunit B

Details for RP23-133J9.4 - ATPase, H+ transporting, lysosomal V0 subunit B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 114143

Tuberculist Genomic Region

12183 2,3-bisphosphoglycerate mutase

Details for - - 2,3-bisphosphoglycerate mutase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12183

Tuberculist Genomic Region

14426 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 4

Details for - - UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14426

Tuberculist Genomic Region

14874 glutathione transferase zeta 1 (maleylacetoacetate isomerase)

Details for - - glutathione transferase zeta 1 (maleylacetoacetate isomerase)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14874

Tuberculist Genomic Region

16351 IAP promoted placental gene

Details for RP23-233B9.2 - IAP promoted placental gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16351

Tuberculist Genomic Region

16548 ketohexokinase

Details for - - ketohexokinase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16548

Tuberculist Genomic Region

19340 RAB3D, member RAS oncogene family

Details for - - RAB3D, member RAS oncogene family

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 19340

Tuberculist Genomic Region

211986 transmembrane protein 18

Details for - - transmembrane protein 18

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 211986

Tuberculist Genomic Region

212627 phosphoribosyl pyrophosphate synthetase-associated protein 2

Details for RP23-278F12.1 - phosphoribosyl pyrophosphate synthetase-associated protein 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 212627

Tuberculist Genomic Region

223646 nicotinate phosphoribosyltransferase domain containing 1

Details for - - nicotinate phosphoribosyltransferase domain containing 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 223646

Tuberculist Genomic Region

235320 zinc finger and BTB domain containing 16

Details for - - zinc finger and BTB domain containing 16

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 235320

Tuberculist Genomic Region

30951 chromobox 8

Details for RP23-458A23.1 - chromobox 8

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 30951

Tuberculist Genomic Region

56401 leprecan 1

Details for RP23-344D2.11-004 - leprecan 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 56401

Tuberculist Genomic Region

56743 linker for activation of T cells family, member 2

Details for - - linker for activation of T cells family, member 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 56743

Tuberculist Genomic Region

66349 ATP5S-like

Details for - - ATP5S-like

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66349

Tuberculist Genomic Region

66752 RIKEN cDNA 4933404O12 gene

Details for - - RIKEN cDNA 4933404O12 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66752

Tuberculist Genomic Region

67381 mediator complex subunit 4

Details for - - mediator complex subunit 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67381

Tuberculist Genomic Region

67976 TraB domain containing

Details for - - TraB domain containing

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67976

Tuberculist Genomic Region

68073 family with sequence similarity 173, member B

Details for - - family with sequence similarity 173, member B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68073

Tuberculist Genomic Region

71743 Coenzyme A synthase

Details for RP23-440M18.3 - Coenzyme A synthase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 71743

Tuberculist Genomic Region

73739 chibby homolog 1 (Drosophila)

Details for - - chibby homolog 1 (Drosophila)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 73739

Tuberculist Genomic Region

99152 anaphase promoting complex subunit 2

Details for RP23-132N23.17-001 - anaphase promoting complex subunit 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 99152

Tuberculist Genomic Region

330216 metallo-beta-lactamase domain containing 1

Details for - - metallo-beta-lactamase domain containing 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 330216

Tuberculist Genomic Region

56520 NME/NM23 nucleoside diphosphate kinase 4

Details for - - NME/NM23 nucleoside diphosphate kinase 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 56520

Tuberculist Genomic Region

11949 ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1

Details for RP23-119N4.1 - ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 11949

Tuberculist Genomic Region

21770 protein phosphatase 2, regulatory subunit B', delta

Details for - - protein phosphatase 2, regulatory subunit B', delta

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 21770

Tuberculist Genomic Region

382010 centrosomal protein 44

Details for - - centrosomal protein 44

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 382010

Tuberculist Genomic Region

56357 isovaleryl coenzyme A dehydrogenase

Details for RP23-172B16.1 - isovaleryl coenzyme A dehydrogenase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 56357

Tuberculist Genomic Region

70207 translational activator of mitochondrially encoded cytochrome c oxidase I

Details for RP23-81G14.4 - translational activator of mitochondrially encoded cytochrome c oxidase I

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 70207

Tuberculist Genomic Region

72154 zinc finger protein 157

Details for - - zinc finger protein 157

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 72154

Tuberculist Genomic Region

76568 intraflagellar transport 46

Details for - - intraflagellar transport 46

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 76568

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
V_GKLF_02_M01588 0.967742 0.0000236

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
0.0079 AAASAAAACAAA NA 2800 AATAAATAARWA NA

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
1.29 CGCCGT NA 1.29 CGTTGACG NA

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.63 CGACCG NA NA 0.73 CGTACANG NA NA

3p UTR PITA

miRNAs percTargets pValue
NA

3p UTR TargetScan

miRNAs percTargets pValue
NA

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