TargetScan_110 megaCluster: 8 Residual: 0.18

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
TargetScan_110 8 0.18 15 0 0.937416 0

Members

Displaying 1 - 36 of 36
117591 solute carrier family 2 (facilitated glucose transporter), member 9

Details for - - solute carrier family 2 (facilitated glucose transporter), member 9

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 117591

Tuberculist Genomic Region

12041 branched chain ketoacid dehydrogenase kinase

Details for - - branched chain ketoacid dehydrogenase kinase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12041

Tuberculist Genomic Region

140742 sestrin 1

Details for - - sestrin 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 140742

Tuberculist Genomic Region

18640 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2

Details for - - 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 18640

Tuberculist Genomic Region

224014 FYVE, RhoGEF and PH domain containing 4

Details for - - FYVE, RhoGEF and PH domain containing 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 224014

Tuberculist Genomic Region

228983 oxysterol binding protein-like 2

Details for RP23-16P3.1 - oxysterol binding protein-like 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 228983

Tuberculist Genomic Region

71732 vacuolar protein sorting 11 (yeast)

Details for - - vacuolar protein sorting 11 (yeast)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 71732

Tuberculist Genomic Region

100900 HscB iron-sulfur cluster co-chaperone homolog (E. coli)

Details for - - HscB iron-sulfur cluster co-chaperone homolog (E. coli)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100900

Tuberculist Genomic Region

100929 tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)

Details for - - tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100929

Tuberculist Genomic Region

11518 adducin 1 (alpha)

Details for - - adducin 1 (alpha)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 11518

Tuberculist Genomic Region

12576 cyclin-dependent kinase inhibitor 1B

Details for - - cyclin-dependent kinase inhibitor 1B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 12576

Tuberculist Genomic Region

14247 Friend leukemia integration 1

Details for - - Friend leukemia integration 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14247

Tuberculist Genomic Region

14385 solute carrier family 37 (glucose-6-phosphate transporter), member 4

Details for - - solute carrier family 37 (glucose-6-phosphate transporter), member 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14385

Tuberculist Genomic Region

16413 integrin beta 1 binding protein 1

Details for - - integrin beta 1 binding protein 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 16413

Tuberculist Genomic Region

17346 MAP kinase-interacting serine/threonine kinase 1

Details for RP23-374N19.2 - MAP kinase-interacting serine/threonine kinase 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17346

Tuberculist Genomic Region

214895 lectin, mannose-binding 2-like

Details for - - lectin, mannose-binding 2-like

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 214895

Tuberculist Genomic Region

217473 ankyrin repeat and MYND domain containing 2

Details for - - ankyrin repeat and MYND domain containing 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 217473

Tuberculist Genomic Region

231670 F-box protein 21

Details for - - F-box protein 21

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 231670

Tuberculist Genomic Region

234413 zinc finger protein 961

Details for - - zinc finger protein 961

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 234413

Tuberculist Genomic Region

241303 family with sequence similarity 78, member A

Details for RP23-55I14.8 - family with sequence similarity 78, member A

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 241303

Tuberculist Genomic Region

27015 polymerase (DNA directed), kappa

Details for - - polymerase (DNA directed), kappa

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 27015

Tuberculist Genomic Region

27419 alpha-N-acetylglucosaminidase (Sanfilippo disease IIIB)

Details for - - alpha-N-acetylglucosaminidase (Sanfilippo disease IIIB)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 27419

Tuberculist Genomic Region

50753 F-box protein 8

Details for - - F-box protein 8

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 50753

Tuberculist Genomic Region

56249 ARP8 actin-related protein 8

Details for - - ARP8 actin-related protein 8

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 56249

Tuberculist Genomic Region

64291 oxysterol binding protein-like 1A

Details for - - oxysterol binding protein-like 1A

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 64291

Tuberculist Genomic Region

67826 synaptosomal-associated protein, 47

Details for RP23-378H5.4 - synaptosomal-associated protein, 47

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67826

Tuberculist Genomic Region

68098 ring finger and CHY zinc finger domain containing 1

Details for - - ring finger and CHY zinc finger domain containing 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68098

Tuberculist Genomic Region

68472 transmembrane protein 126B

Details for - - transmembrane protein 126B

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68472

Tuberculist Genomic Region

68675 family with sequence similarity 172, member A

Details for - - family with sequence similarity 172, member A

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68675

Tuberculist Genomic Region

73747 RIKEN cDNA 1110034G24 gene

Details for RP23-391A14.5 - RIKEN cDNA 1110034G24 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 73747

Tuberculist Genomic Region

74114 carnitine O-octanoyltransferase

Details for - - carnitine O-octanoyltransferase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 74114

Tuberculist Genomic Region

74764 kinesin light chain 4

Details for - - kinesin light chain 4

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 74764

Tuberculist Genomic Region

75415 Rho GTPase activating protein 12

Details for - - Rho GTPase activating protein 12

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 75415

Tuberculist Genomic Region

76608 HECT domain containing 3

Details for RP23-419D6.4 - HECT domain containing 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 76608

Tuberculist Genomic Region

26406 mitogen-activated protein kinase kinase kinase 3

Details for RP23-81G14.5 - mitogen-activated protein kinase kinase kinase 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 26406

Tuberculist Genomic Region

20226 seryl-aminoacyl-tRNA synthetase

Details for RP23-37G19.1 - seryl-aminoacyl-tRNA synthetase

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20226

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
V_FXR_Q3_M00631 0.222222 0.000000746

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
50 AARTAAWGNTTT NA 480 NTAWATTTANWT NA

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
1.09 AGCCGC NA 1.18 CGCCTGCG V$ZFP206_01_M01742

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.48 CGGACG NA NA 0.53 NGGACNTG NA NA

3p UTR PITA

miRNAs percTargets pValue
NA

3p UTR TargetScan

miRNAs percTargets pValue
mmu-miR-3965 0.333333 0.000026

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