TargetScan_120 megaCluster: 3 Residual: 0.29

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
TargetScan_120 3 0.29 14 0 0.80761 0

Members

Displaying 1 - 43 of 43
100124687 T cell receptor beta variable 22

Details for - - T cell receptor beta variable 22

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100124687

Tuberculist Genomic Region

101023 zinc finger protein 513

Details for - - zinc finger protein 513

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 101023

Tuberculist Genomic Region

114672 RIKEN cDNA 1700007E05 gene

Details for - - RIKEN cDNA 1700007E05 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 114672

Tuberculist Genomic Region

14123 fibrosin

Details for - - fibrosin

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14123

Tuberculist Genomic Region

20307 chemokine (C-C motif) ligand 8

Details for RP23-446K18.1 - chemokine (C-C motif) ligand 8

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20307

Tuberculist Genomic Region

20544 solute carrier family 9 (sodium/hydrogen exchanger), member 1

Details for RP23-32C12.6 - solute carrier family 9 (sodium/hydrogen exchanger), member 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20544

Tuberculist Genomic Region

216874 calmodulin binding transcription activator 2

Details for DN-183N8.19-006 - calmodulin binding transcription activator 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 216874

Tuberculist Genomic Region

21748 telomerase RNA component

Details for - - telomerase RNA component

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 21748

Tuberculist Genomic Region

231830 MICAL-like 2

Details for - - MICAL-like 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 231830

Tuberculist Genomic Region

257919 olfactory receptor 467

Details for - - olfactory receptor 467

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 257919

Tuberculist Genomic Region

258350 olfactory receptor 706

Details for - - olfactory receptor 706

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 258350

Tuberculist Genomic Region

331476 predicted gene 5125

Details for - - predicted gene 5125

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 331476

Tuberculist Genomic Region

387230 microRNA 99b

Details for - - microRNA 99b

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 387230

Tuberculist Genomic Region

545205 olfactory receptor 111

Details for - - olfactory receptor 111

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 545205

Tuberculist Genomic Region

724112 cDNA sequence BC106175

Details for - - cDNA sequence BC106175

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 724112

Tuberculist Genomic Region

100312473 vomeronasal 1 receptor 86

Details for - - vomeronasal 1 receptor 86

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100312473

Tuberculist Genomic Region

100504417 predicted gene, 20215

Details for - - predicted gene, 20215

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100504417

Tuberculist Genomic Region

106759 toll-like receptor adaptor molecule 1

Details for - - toll-like receptor adaptor molecule 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 106759

Tuberculist Genomic Region

14118 fibrillin 1

Details for RP23-368I1.1 - fibrillin 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14118

Tuberculist Genomic Region

142688 ankyrin repeat and SOCS box-containing 13

Details for - - ankyrin repeat and SOCS box-containing 13

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 142688

Tuberculist Genomic Region

17254 solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2

Details for - - solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17254

Tuberculist Genomic Region

17470 CD200 antigen

Details for - - CD200 antigen

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17470

Tuberculist Genomic Region

20167 reticulon 2 (Z-band associated protein)

Details for - - reticulon 2 (Z-band associated protein)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20167

Tuberculist Genomic Region

212772 ADP-ribosylation factor-like 14 effector protein

Details for RP23-12N7.2 - ADP-ribosylation factor-like 14 effector protein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 212772

Tuberculist Genomic Region

218793 ubiquitin-conjugating enzyme E2E 2

Details for - - ubiquitin-conjugating enzyme E2E 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 218793

Tuberculist Genomic Region

218820 zinc finger protein 503

Details for - - zinc finger protein 503

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 218820

Tuberculist Genomic Region

22259 nuclear receptor subfamily 1, group H, member 3

Details for RP23-20F9.5 - nuclear receptor subfamily 1, group H, member 3

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 22259

Tuberculist Genomic Region

258783 olfactory receptor 920

Details for - - olfactory receptor 920

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 258783

Tuberculist Genomic Region

27081 zinc finger protein 275

Details for RP23-95K12.3 - zinc finger protein 275

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 27081

Tuberculist Genomic Region

382034 genetic suppressor element 1

Details for - - genetic suppressor element 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 382034

Tuberculist Genomic Region

387160 microRNA 142

Details for - - microRNA 142

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 387160

Tuberculist Genomic Region

66168 glutamate receptor, ionotropic, N-methyl D-aspartate-associated protein 1 (glutamate binding)

Details for - - glutamate receptor, ionotropic, N-methyl D-aspartate-associated protein 1 (glutamate binding)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 66168

Tuberculist Genomic Region

70249 RIKEN cDNA 3100002H09 gene

Details for - - RIKEN cDNA 3100002H09 gene

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 70249

Tuberculist Genomic Region

74440 c-Maf inducing protein

Details for - - c-Maf inducing protein

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 74440

Tuberculist Genomic Region

11603 agrin

Details for RP23-139J18.2 - agrin

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 11603

Tuberculist Genomic Region

17390 matrix metallopeptidase 2

Details for - - matrix metallopeptidase 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17390

Tuberculist Genomic Region

19275 protein tyrosine phosphatase, receptor type, N

Details for - - protein tyrosine phosphatase, receptor type, N

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 19275

Tuberculist Genomic Region

19697 v-rel reticuloendotheliosis viral oncogene homolog A (avian)

Details for - - v-rel reticuloendotheliosis viral oncogene homolog A (avian)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 19697

Tuberculist Genomic Region

68836 mitochondrial ribosomal protein L52

Details for - - mitochondrial ribosomal protein L52

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 68836

Tuberculist Genomic Region

100502793 predicted gene, 19375

Details for - - predicted gene, 19375

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100502793

Tuberculist Genomic Region

20304 chemokine (C-C motif) ligand 5

Details for RP23-320E6.2 - chemokine (C-C motif) ligand 5

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 20304

Tuberculist Genomic Region

56738 molybdenum cofactor synthesis 1

Details for - - molybdenum cofactor synthesis 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 56738

Tuberculist Genomic Region

74919 solute carrier family 35, member F6

Details for - - solute carrier family 35, member F6

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 74919

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
Egr1_C2H2_mouse-DBD_mutant_DBD_monomeric_16_1 0.896552 0.0000033

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
0.00000022 AAAWGAANRAAA NA 0.0059 AAAAWAGAAAA IRF1_MA0050.1

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
0.86 ACGGCG NA 1.05 NGGGCCGG Bcl6b.2, Zfp410.1

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
0.63 TCGCCG NA NA 0.77 CCCCNACT NA NA

3p UTR PITA

miRNAs percTargets pValue
NA

3p UTR TargetScan

miRNAs percTargets pValue
NA

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