TargetScan_80 megaCluster: 7 Residual: 0.15 | Macrophage Network Portal

Summary

Title	Cluster	Residual	Bicluster Conditions	Residual Permutation P-Value	Var. Exp. First PC	Var. Exp. First PC Perm. P-Value
TargetScan_80	7	0.15	15	0	0.961955	0

Members

Displaying 1 - 31 of 31

100504663 autophagy related 14 Details for mCG_6911 - autophagy related 14 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 100504663 Tuberculist Genomic Region	100855 TBC1 domain family, member 14 Details for - - TBC1 domain family, member 14 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 100855 Tuberculist Genomic Region
104112 ATP citrate lyase Details for RP23-392I3.9 - ATP citrate lyase GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 104112 Tuberculist Genomic Region	104479 coiled-coil domain containing 117 Details for RP23-288K19.5 - coiled-coil domain containing 117 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 104479 Tuberculist Genomic Region
107197 expressed sequence AI462493 Details for - - expressed sequence AI462493 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 107197 Tuberculist Genomic Region	11409 acyl-Coenzyme A dehydrogenase, short chain Details for - - acyl-Coenzyme A dehydrogenase, short chain GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 11409 Tuberculist Genomic Region
12039 branched chain ketoacid dehydrogenase E1, alpha polypeptide Details for - - branched chain ketoacid dehydrogenase E1, alpha polypeptide GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 12039 Tuberculist Genomic Region	212647 aldehyde dehydrogenase 4 family, member A1 Details for RP23-334I5.1 - aldehyde dehydrogenase 4 family, member A1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 212647 Tuberculist Genomic Region
217827 nrde-2 necessary for RNA interference, domain containing Details for - - nrde-2 necessary for RNA interference, domain containing GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 217827 Tuberculist Genomic Region	22697 zinc finger and SCAN domain containing 21 Details for - - zinc finger and SCAN domain containing 21 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 22697 Tuberculist Genomic Region
227197 NADH dehydrogenase (ubiquinone) Fe-S protein 1 Details for - - NADH dehydrogenase (ubiquinone) Fe-S protein 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 227197 Tuberculist Genomic Region	227620 UDP-N-acteylglucosamine pyrophosphorylase 1-like 1 Details for RP23-47P18.3 - UDP-N-acteylglucosamine pyrophosphorylase 1-like 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 227620 Tuberculist Genomic Region
229211 acyl-Coenzyme A dehydrogenase family, member 9 Details for - - acyl-Coenzyme A dehydrogenase family, member 9 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 229211 Tuberculist Genomic Region	240066 zinc finger protein 870 Details for - - zinc finger protein 870 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 240066 Tuberculist Genomic Region
56453 membrane-bound transcription factor peptidase, site 1 Details for - - membrane-bound transcription factor peptidase, site 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 56453 Tuberculist Genomic Region	58193 exostoses (multiple)-like 2 Details for - - exostoses (multiple)-like 2 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 58193 Tuberculist Genomic Region
66905 perilipin 3 Details for - - perilipin 3 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 66905 Tuberculist Genomic Region	67510 trans-golgi network vesicle protein 23B Details for RP23-428I5.3 - trans-golgi network vesicle protein 23B GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 67510 Tuberculist Genomic Region
67727 syntaxin 17 Details for RP23-122N18.3 - syntaxin 17 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 67727 Tuberculist Genomic Region	72320 RIKEN cDNA 2510003E04 gene Details for - - RIKEN cDNA 2510003E04 gene GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 72320 Tuberculist Genomic Region
78100 Myb/SANT-like DNA-binding domain containing 4 with coiled-coils Details for - - Myb/SANT-like DNA-binding domain containing 4 with coiled-coils GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 78100 Tuberculist Genomic Region	15356 3-hydroxy-3-methylglutaryl-Coenzyme A lyase Details for RP23-161N17.7 - 3-hydroxy-3-methylglutaryl-Coenzyme A lyase GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 15356 Tuberculist Genomic Region
18597 pyruvate dehydrogenase E1 alpha 1 Details for RP23-36P16.4 - pyruvate dehydrogenase E1 alpha 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 18597 Tuberculist Genomic Region	233056 zinc finger protein 790 Details for - - zinc finger protein 790 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 233056 Tuberculist Genomic Region
53317 pleiotropic regulator 1, PRL1 homolog (Arabidopsis) Details for - - pleiotropic regulator 1, PRL1 homolog (Arabidopsis) GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 53317 Tuberculist Genomic Region	70207 translational activator of mitochondrially encoded cytochrome c oxidase I Details for RP23-81G14.4 - translational activator of mitochondrially encoded cytochrome c oxidase I GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 70207 Tuberculist Genomic Region
74142 lon peptidase 1, mitochondrial Details for - - lon peptidase 1, mitochondrial GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 74142 Tuberculist Genomic Region	56794 2-hydroxyacyl-CoA lyase 1 Details for - - 2-hydroxyacyl-CoA lyase 1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 56794 Tuberculist Genomic Region
66335 ATPase, H+ transporting, lysosomal V1 subunit C1 Details for - - ATPase, H+ transporting, lysosomal V1 subunit C1 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 66335 Tuberculist Genomic Region	67452 patatin-like phospholipase domain containing 8 Details for - - patatin-like phospholipase domain containing 8 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 67452 Tuberculist Genomic Region
68839 ankyrin repeat domain 46 Details for - - ankyrin repeat domain 46 GO Terms: NA PATRIC Pathways: [field_patric_pathways] Essentiality: Griffin Essential: [field_griffin_essential] \| In vitro Essential: [field_in_vitro_essential] \| In vivo Essential: [field_in_vivo_essential] Go to Gene Page: 68839 Tuberculist Genomic Region

TFBS DB TF

TFs	percTargets	pValue
V_GR_Q6_M00192	0.419355	0.0000273

GO Terms

Displaying 1 - 1 of 1

GO Terms
NA

Upstream MEME Motif

Motif1 E-Value	Motif1 Consensus	Motif1 Matches	Motif2 E-Value	Motif2 Consensus	Motif2 Matches
0.0034	AATTNAAAAAAA	NA	1.8	GGCCCCGCCCCY	Klf4_MA0039.2, SP1_MA0079.2, SP1_MA0079.1, V$SP1_Q6_M00196, V$SP1_Q4_01_M00932, V$KLF7_03_M02773, V$GC_01_M00255, V$SP1_Q6_01_M00931, V$SP4_Q5_M01273, V$SP1_Q2_01_M00933, V$GKLF_02_M01588, V$SP4_03_M02810, V$MAZR_01_M00491, V$SP1_02_M01303, V$SP1_03_M02281, V$SP1_01_M00008, V$E2F3_Q6_M02089, V$SMAD4_04_M02898, V$ZFP281_01_M01597, V$SP2_01_M01783, V$CKROX_Q2_M01175, V$UF1H3BETA_Q6_M01068, V$CACD_01_M01113, V$SP4_04_M02914, V$KROX_Q6_M00982, V$EGR1_Q6_M01873, V$ZFP281_04_M02831, V$EGR1_06_M02744, V$MAZ_Q6_M00649, V$ZBP89_Q4_M01816, V$ZFP740_03_M02834, V$BCL6B_04_M02844, V$EKLF_Q5_M01874, V$SP1SP3_Q4_M01219, V$MAZ_Q6_01_M02023, V$E2F_Q2_M00803, V$WT1_Q6_01_M02036, V$ZFP410_04_M02936, V$ZNF219_01_M01122, V$CNOT3_01_M01253, V$ETF_Q6_M00695, V$CACCCBINDINGFACTOR_Q6_M00721, V$KLF15_Q2_M01714, V$EGR_Q6_M00807, Klf7.1, Sp4.1, Smad3.1, Sp4.2, Egr1.1, Zfp281.2, Zfp740.1, Bcl6b.2, Zfp410.1, Zif268.1, Klf7.2, Ascl2.2, SP4_C2H2_full_monomeric_17_1, KLF14_C2H2_DBD_monomeric_14_1, SP1_C2H2_DBD_monomeric_11_1, KLF13_C2H2_full_monomeric_18_1, KLF16_C2H2_DBD_monomeric_11_1, Klf12_C2H2_DBD_monomeric_15_1, SP3_C2H2_DBD_monomeric_11_1, SP8_C2H2_DBD_monomeric_12_1, ZNF740_C2H2_full_monomeric_10_1

Upstream Weeder Motif

Motif1 Score	Motif1 Consensus	Motif1 Matches	Motif2 Score	Motif2 Consensus	Motif2 Matches
1.24	CGTCCG	MIZF_MA0131.1, V$MIZF_01_M01182	1.13	CGCGTCCG	NA

3p UTR Weeder

Motif1 E-Value	Motif1 Consensus	Motif1 Matches	Motif1 Model	Motif2 E-Value	Motif2 Consensus	Motif2 Matches	Motif2 Model
0.67	AGGTGNNT	NA	NA		NA	NA	NA

3p UTR PITA

miRNAs	percTargets	pValue
NA

3p UTR TargetScan

miRNAs	percTargets	pValue
NA

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