TargetScan_116 megaCluster: 3 Residual: 0.11

Summary

Title Cluster Residual Bicluster Conditions Residual Permutation P-Value Var. Exp. First PC Var. Exp. First PC Perm. P-Value
TargetScan_116 3 0.11 15 0.001 0.977065 0

Members

Displaying 1 - 17 of 17
67712 solute carrier family 25, member 37

Details for - - solute carrier family 25, member 37

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 67712

Tuberculist Genomic Region

74645 family with sequence similarity 46, member C

Details for DN-384L23.3 - family with sequence similarity 46, member C

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 74645

Tuberculist Genomic Region

100503552 predicted gene, 19765

Details for - - predicted gene, 19765

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 100503552

Tuberculist Genomic Region

105559 muscleblind-like 2

Details for - - muscleblind-like 2

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 105559

Tuberculist Genomic Region

14081 acyl-CoA synthetase long-chain family member 1

Details for - - acyl-CoA synthetase long-chain family member 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14081

Tuberculist Genomic Region

14726 podoplanin

Details for RP23-348F1.2 - podoplanin

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 14726

Tuberculist Genomic Region

15945 chemokine (C-X-C motif) ligand 10

Details for - - chemokine (C-X-C motif) ligand 10

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 15945

Tuberculist Genomic Region

15957 interferon-induced protein with tetratricopeptide repeats 1

Details for - - interferon-induced protein with tetratricopeptide repeats 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 15957

Tuberculist Genomic Region

17387 matrix metallopeptidase 14 (membrane-inserted)

Details for - - matrix metallopeptidase 14 (membrane-inserted)

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 17387

Tuberculist Genomic Region

208263 torsin A interacting protein 1

Details for - - torsin A interacting protein 1

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 208263

Tuberculist Genomic Region

212943 family with sequence similarity 46, member A

Details for - - family with sequence similarity 46, member A

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 212943

Tuberculist Genomic Region

432486 N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits

Details for - - N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 432486

Tuberculist Genomic Region

56619 C-type lectin domain family 4, member e

Details for - - C-type lectin domain family 4, member e

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 56619

Tuberculist Genomic Region

60533 CD274 antigen

Details for - - CD274 antigen

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 60533

Tuberculist Genomic Region

672511 ring finger protein 213

Details for RP23-25M3.4 - ring finger protein 213

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 672511

Tuberculist Genomic Region

80719 immunoglobulin superfamily, member 6

Details for - - immunoglobulin superfamily, member 6

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 80719

Tuberculist Genomic Region

80910 G protein-coupled receptor 84

Details for - - G protein-coupled receptor 84

GO Terms: NA

PATRIC Pathways: [field_patric_pathways]

Essentiality: Griffin Essential: [field_griffin_essential] | In vitro Essential: [field_in_vitro_essential] | In vivo Essential: [field_in_vivo_essential]

Go to Gene Page: 80910

Tuberculist Genomic Region

TFBS DB TF

TFs percTargets pValue
V_IRF2_01_M00063 0.533333 0.0000000644

GO Terms

Displaying 1 - 1 of 1
GO Terms
NA

Upstream MEME Motif

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif2 E-Value Motif2 Consensus Motif2 Matches
0.12 AAAMAAAA NA 100 AAMAAATGKAAA NA

Upstream Weeder Motif

Motif1 Score Motif1 Consensus Motif1 Matches Motif2 Score Motif2 Consensus Motif2 Matches
0.91 CGCAAC NA 1.25 CACGCCAA NA

3p UTR Weeder

Motif1 E-Value Motif1 Consensus Motif1 Matches Motif1 Model Motif2 E-Value Motif2 Consensus Motif2 Matches Motif2 Model
1.47 NGTACCAA mmu-mir-547-3p 7mer_a1 NA NA NA

3p UTR PITA

miRNAs percTargets pValue
mmu-miR-409-3p 0.846154 0.000067

3p UTR TargetScan

miRNAs percTargets pValue
NA

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