Organism : Pseudomonas aeruginosa | Module List :
Regulation information for PA1934(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for PA1934
|Gene||Common Name||Description||Module membership|
|PA0104||PA0104||hypothetical protein (NCBI)||320, 335|
|PA0195||pntA||putative NAD(P) transhydrogenase subunit alpha 1 (NCBI)||9, 342|
|PA0196||pntB||pyridine nucleotide transhydrogenase, beta subunit (NCBI)||9, 342|
|PA0257||PA0257||hypothetical protein (NCBI)||9, 450|
|PA0258||PA0258||hypothetical protein (NCBI)||9, 450|
|PA0259||PA0259||hypothetical protein (NCBI)||87, 320|
|PA0320||PA0320||hypothetical protein (NCBI)||9, 212|
|PA0333||PA0333||hypothetical protein (NCBI)||61, 320|
|PA0368||PA0368||hypothetical protein (NCBI)||320, 355|
|PA0422||PA0422||hypothetical protein (NCBI)||8, 9|
|PA0423||PA0423||hypothetical protein (NCBI)||9, 436|
|PA0542||PA0542||hypothetical protein (NCBI)||9, 261|
|PA0599||PA0599||hypothetical protein (NCBI)||9, 53|
|PA0851||PA0851||hypothetical protein (NCBI)||320, 475|
|PA0983||PA0983||hypothetical protein (NCBI)||168, 320|
|PA1127||PA1127||probable oxidoreductase (NCBI)||26, 320|
|PA1181||PA1181||hypothetical protein (NCBI)||202, 320|
|PA1182||PA1182||probable transcriptional regulator (NCBI)||9, 20|
|PA1263||PA1263||hypothetical protein (NCBI)||9, 72|
|PA1368||PA1368||hypothetical protein (NCBI)||320, 445|
|PA1423||PA1423||probable chemotaxis transducer (NCBI)||268, 320|
|PA1487||PA1487||probable carbohydrate kinase (NCBI)||295, 320|
|PA1506||PA1506||hypothetical protein (NCBI)||320, 321|
|PA1622||PA1622||probable hydrolase (NCBI)||320, 387|
|PA1624||PA1624||hypothetical protein (NCBI)||10, 320|
|PA1651||PA1651||probable transporter (NCBI)||320, 321|
|PA1859||PA1859||probable transcriptional regulator (NCBI)||9, 295|
|PA1863||modA||molybdate-binding periplasmic protein precursor ModA (NCBI)||9, 263|
|PA1898||qscR||quorum-sensing control repressor (NCBI)||9, 20|
|PA1934||PA1934||hypothetical protein (NCBI)||9, 320|
|PA1942||PA1942||hypothetical protein (NCBI)||9, 108|
|PA2049||PA2049||hypothetical protein (NCBI)||60, 320|
|PA2128||cupA1||fimbrial subunit CupA1 (NCBI)||9, 461|
|PA2199||PA2199||probable dehydrogenase (NCBI)||320, 389|
|PA2437||PA2437||hypothetical protein (NCBI)||320, 446|
|PA2541||PA2541||probable CDP-alcohol phosphatidyltransferase (NCBI)||9, 487|
|PA2556||PA2556||probable transcriptional regulator (NCBI)||87, 320|
|PA2813||PA2813||probable glutathione S-transferase (NCBI)||9, 108|
|PA2822||PA2822||hypothetical protein (NCBI)||295, 320|
|PA2825||PA2825||probable transcriptional regulator (NCBI)||79, 320|
|PA2943||PA2943||phospho-2-dehydro-3-deoxyheptonate aldolase (NCBI)||8, 9|
|PA3030||mobA||molybdopterin-guanine dinucleotide biosynthesis protein A (NCBI)||9, 187|
|PA3055||PA3055||hypothetical protein (NCBI)||9, 452|
|PA3072||PA3072||hypothetical protein (NCBI)||320, 387|
|PA3093||PA3093||hypothetical protein (NCBI)||157, 320|
|PA3124||PA3124||probable transcriptional regulator (NCBI)||196, 320|
|PA3254||PA3254||probable ATP-binding component of ABC transporter (NCBI)||84, 320|
|PA3255||PA3255||hypothetical protein (NCBI)||84, 320|
|PA3317||PA3317||hypothetical protein (NCBI)||31, 320|
|PA3469||PA3469||hypothetical protein (NCBI)||4, 9|
|PA3470||PA3470||hypothetical protein (NCBI)||4, 9|
|PA3575||PA3575||hypothetical protein (NCBI)||9, 224|
|PA3779||PA3779||hypothetical protein (NCBI)||9, 16|
|PA3969||PA3969||hypothetical protein (NCBI)||320, 475|
|PA4018||PA4018||hypothetical protein (NCBI)||320, 355|
|PA4114||PA4114||spermidine acetyltransferase (NCBI)||9, 245|
|PA4139||PA4139||hypothetical protein (NCBI)||9, 371|
|PA4162||PA4162||short chain dehydrogenase (NCBI)||39, 320|
|PA4183||PA4183||hypothetical protein (NCBI)||187, 320|
|PA4388||PA4388||hypothetical protein (NCBI)||3, 320|
|PA4392||PA4392||hypothetical protein (NCBI)||320, 450|
|PA4486||PA4486||hypothetical protein (NCBI)||30, 320|
|PA4625||PA4625||hypothetical protein (NCBI)||9, 39|
|PA4784||PA4784||probable transcriptional regulator (NCBI)||9, 268|
|PA5122||PA5122||hypothetical protein (NCBI)||9, 477|
|PA5123||PA5123||hypothetical protein (NCBI)||187, 320|
|PA5233||PA5233||flagellar protein (NCBI)||9, 368|
|PA5428||PA5428||probable transcriptional regulator (NCBI)||9, 283|
|PA5533||PA5533||hypothetical protein (NCBI)||9, 187|
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If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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