Organism : Pseudomonas aeruginosa | Module List :
Regulation information for PA4622(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for PA4622
|Gene||Common Name||Description||Module membership|
|PA0037||trpI||transcriptional regulator TrpI (NCBI)||375, 377|
|PA0218||PA0218||probable transcriptional regulator (NCBI)||236, 394|
|PA0245||aroQ2||3-dehydroquinate dehydratase (NCBI)||65, 377|
|PA0334||PA0334||probable major facilitator superfamily (MFS) transporter (NCBI)||92, 377|
|PA0383||PA0383||hypothetical protein (NCBI)||375, 377|
|PA0438||codB||cytosine permease (NCBI)||40, 377|
|PA0774||PA0774||hypothetical protein (NCBI)||40, 377|
|PA0975||PA0975||probable radical activating enzyme (NCBI)||135, 377|
|PA1361||PA1361||probable transporter (NCBI)||48, 377|
|PA1499||PA1499||hypothetical protein (NCBI)||236, 372|
|PA1500||PA1500||probable oxidoreductase (NCBI)||236, 373|
|PA1501||PA1501||hypothetical protein (NCBI)||236, 373|
|PA1507||PA1507||probable transporter (NCBI)||24, 236|
|PA1514||PA1514||ureidoglycolate hydrolase (NCBI)||236, 328|
|PA1515||alc||allantoicase (NCBI)||236, 328|
|PA1547||PA1547||hypothetical protein (NCBI)||53, 236|
|PA1577||PA1577||hypothetical protein (NCBI)||236, 344|
|PA1626||PA1626||probable major facilitator superfamily (MFS) transporter (NCBI)||236, 438|
|PA1638||PA1638||glutaminase (NCBI)||247, 377|
|PA1920||PA1920||anaerobic ribonucleoside triphosphate reductase (NCBI)||236, 333|
|PA1927||metE||5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase (NCBI)||152, 236|
|PA1993||PA1993||hypothetical protein (NCBI)||196, 236|
|PA2547||PA2547||probable transcriptional regulator (NCBI)||283, 377|
|PA2693||PA2693||hypothetical protein (NCBI)||283, 377|
|PA3035||PA3035||probable glutathione S-transferase (NCBI)||240, 377|
|PA3037||PA3037||hypothetical protein (NCBI)||189, 377|
|PA3411||PA3411||hypothetical protein (NCBI)||247, 377|
|PA3473||PA3473||hypothetical protein (NCBI)||351, 377|
|PA3474||PA3474||hypothetical protein (NCBI)||351, 377|
|PA3532||PA3532||hypothetical protein (NCBI)||375, 377|
|PA3560||fruA||phosphotransferase system, fructose-specific IIBC component (NCBI)||236, 313|
|PA3561||fruK||1-phosphofructokinase (NCBI)||236, 536|
|PA3562||PA3562||probable phosphotransferase system enzyme I (NCBI)||236, 536|
|PA3564||PA3564||hypothetical protein (NCBI)||206, 236|
|PA3571||mmsR||transcriptional regulator MmsR (NCBI)||236, 335|
|PA3598||PA3598||hypothetical protein (NCBI)||236, 334|
|PA3599||PA3599||probable transcriptional regulator (NCBI)||236, 334|
|PA3955||PA3955||hypothetical protein (NCBI)||65, 377|
|PA4062||PA4062||hypothetical protein (NCBI)||23, 236|
|PA4113||PA4113||sugar efflux transporter (NCBI)||377, 422|
|PA4147||acoR||transcriptional regulator AcoR (NCBI)||236, 443|
|PA4169||PA4169||hypothetical protein (NCBI)||48, 236|
|PA4170||PA4170||hypothetical protein (NCBI)||236, 326|
|PA4562||PA4562||hypothetical protein (NCBI)||40, 377|
|PA4622||PA4622||probable major facilitator superfamily (MFS) transporter (NCBI)||236, 377|
|PA4692||PA4692||hypothetical protein (NCBI)||157, 236|
|PA4815||PA4815||hypothetical protein (NCBI)||143, 377|
|PA4817||PA4817||hypothetical protein (NCBI)||65, 377|
|PA4849||PA4849||hypothetical protein (NCBI)||65, 236|
|PA4887||PA4887||probable major facilitator superfamily (MFS) transporter (NCBI)||355, 377|
|PA4962||PA4962||hypothetical protein (NCBI)||23, 377|
|PA5287||amtB||ammonium transporter AmtB (NCBI)||236, 245|
|PA5388||PA5388||hypothetical protein (NCBI)||236, 536|
|PA5405||PA5405||hypothetical protein (NCBI)||65, 377|
|PA5434||mtr||tryptophan permease (NCBI)||207, 377|
|PA5478||PA5478||hypothetical protein (NCBI)||40, 377|
|PA5517||PA5517||hypothetical protein (NCBI)||355, 377|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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