Organism : Rhodobacter sphaeroides 2.4.1 | Module List :
Regulation information for RSP_1187(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for RSP_1187
|Gene||Common Name||Description||Module membership|
|RSP_0334||RSP_0334||hypothetical protein (NCBI)||59, 259|
|RSP_0586||RSP_0586||probable nicotinate-nucleotide adenylyltransferase (NCBI)||7, 215|
|RSP_0650||RSP_0650||Probable transglycosylase (NCBI)||7, 33|
|RSP_0664||RSP_0664||hypothetical protein (NCBI)||59, 344|
|RSP_0724||mscL||Large-conductance mechanosensitive channel (NCBI)||59, 234|
|RSP_0858||RSP_0858||Putative transporter, RhaT family, DMT superfamily (NCBI)||59, 88|
|RSP_0866||RSP_0866||hypothetical protein (NCBI)||7, 357|
|RSP_0879||RSP_0879||hypothetical protein (NCBI)||7, 65|
|RSP_0895||RSP_0895||phosphodiesterase-like (NCBI)||7, 175|
|RSP_0896||RSP_0896||hypothetical protein (NCBI)||7, 87|
|RSP_0949||ostB||putative trehalose-6-phosphate phosphatase (NCBI)||7, 368|
|RSP_1005||gshA||putative glutathione synthetase (NCBI)||7, 181|
|RSP_1006||RSP_1006||hypothetical protein (NCBI)||7, 10|
|RSP_1012||gabD4||succinate-semialdehyde dehdyrogenase (NCBI)||59, 344|
|RSP_1186||RSP_1186||hypothetical protein (NCBI)||59, 67|
|RSP_1187||RSP_1187||hypothetical protein (NCBI)||7, 59|
|RSP_1188||wcaG||Nucleotide sugar epimerase/dehydratase (NCBI)||59, 381|
|RSP_1219||grpE||putative chaperone protein GrpE (heat shock protein) (NCBI)||7, 187|
|RSP_1223||tdcF||Putative translation initiation inhibitor, yjgF family / putative Endoribonuclease L-PSP (NCBI)||7, 258|
|RSP_1337||aarF||probable ubiquinone biosynthesis protein (NCBI)||7, 108|
|RSP_1380||RSP_1380||hypothetical protein (NCBI)||7, 175|
|RSP_1387||RSP_1387||AMP nucleosidase (NCBI)||7, 308|
|RSP_1452||RSP_1452||ABC peptide/nickel/opine transporter, inner membrane subunit (NCBI)||17, 59|
|RSP_1468||RSP_1468||Site-specific DNA-methyltransferase (NCBI)||7, 218|
|RSP_1505||RSP_1505||Putative Metallo-phosphoesterase (NCBI)||59, 344|
|RSP_1507||RSP_1507||Aldehyde dehydrogenase (NCBI)||59, 344|
|RSP_1570||purK||Phosphoribosylaminoimidazole carboxylase, ATPase subunit (NCBI)||7, 374|
|RSP_1775||RSP_1775||hypothetical protein (NCBI)||7, 240|
|RSP_2104||RSP_2104||hypothetical protein (NCBI)||7, 298|
|RSP_2155||hisD||Histidinol dehydrogenase (NCBI)||17, 59|
|RSP_2158||RSP_2158||ABC transporter, periplasmic solute-binding protein (NCBI)||57, 59|
|RSP_2159||RSP_2159||ABC transporter, ATPase subunit (NCBI)||59, 299|
|RSP_2334||pfkB||carbohydrate kinase, PfkB (NCBI)||59, 344|
|RSP_2496||RSP_2496||hypothetical protein (NCBI)||47, 59|
|RSP_2544||RSP_2544||Protein-L-isoaspartate O-methyltransferase (NCBI)||7, 72|
|RSP_2577||cycI||isocytochrome c2 (NCBI)||26, 59|
|RSP_2651||RSP_2651||hypothetical protein (NCBI)||7, 110|
|RSP_2652||RSP_2652||putative Acetyltransferase (NCBI)||7, 110|
|RSP_2715||RSP_2715||hypothetical protein (NCBI)||7, 114|
|RSP_2716||lpxB||putative lipid-A-disaccharide synthase (NCBI)||7, 240|
|RSP_2844||RSP_2844||Putative GTP-binding protein (NCBI)||59, 114|
|RSP_2917||RSP_2917||putative cystathionine gamma-synthase beta-lyase (NCBI)||7, 383|
|RSP_2950||RSP_2950||Transcriptional regulator, LysR family (NCBI)||7, 263|
|RSP_3209||cbiQ||ABC cobalt transporter, inner membrane subunit, CbiQ (NCBI)||7, 100|
|RSP_3237||lguL||Lactoylglutathione lyase (NCBI)||7, 301|
|RSP_3401||RSP_3401||diguanylate cyclase (NCBI)||17, 59|
|RSP_3508||RSP_3508||predicted acetamidase/formamidase (NCBI)||59, 344|
|RSP_3538||RSP_3538||hypothetical protein (NCBI)||59, 344|
|RSP_3539||RSP_3539||Hemolysin-type calcium-binding region, RTX (NCBI)||59, 344|
|RSP_3540||RSP_3540||Putative adhesin or RTX toxin (NCBI)||59, 344|
|RSP_3564||RSP_3564||Generic methyltransferase (NCBI)||7, 215|
|RSP_3833||fadB||enoyl CoA hydratase (NCBI)||59, 278|
|RSP_3834||RSP_3834||hypothetical protein (NCBI)||59, 274|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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