Organism : Rhodobacter sphaeroides 2.4.1 | Module List :
Regulation information for RSP_2994(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for RSP_2994
|Gene||Common Name||Description||Module membership|
|RSP_1170||RSP_1170||OmpA family protein (NCBI)||267, 355|
|RSP_1205||RSP_1205||Poly A polymerase family protein (NCBI)||6, 355|
|RSP_1444||RSP_1444||ABC sugar transporter, inner membrane subunit (NCBI)||155, 325|
|RSP_1449||RSP_1449||Putative transcriptional regulator of sugar metabolism (NCBI)||155, 307|
|RSP_1533||RSP_1533||putative alginate O-acetyltransferase (NCBI)||101, 355|
|RSP_1534||RSP_1534||putative acyl carrier protein (NCBI)||101, 355|
|RSP_1535||RSP_1535||hypothetical protein (NCBI)||101, 355|
|RSP_1648||RSP_1648||hypothetical protein (NCBI)||193, 355|
|RSP_1649||RSP_1649||Possible transporter, DMT superfamily (NCBI)||188, 355|
|RSP_1753||RSP_1753||hypothetical protein (NCBI)||304, 355|
|RSP_1953||RSP_1953||Transcriptional regulator, CRP/FNR family (NCBI)||155, 325|
|RSP_1954||RSP_1954||hypothetical protein (NCBI)||155, 304|
|RSP_1961||RSP_1961||hypothetical protein (NCBI)||235, 355|
|RSP_2076||RSP_2076||hypothetical protein (NCBI)||189, 355|
|RSP_2077||RSP_2077||hypothetical protein (NCBI)||313, 355|
|RSP_2078||RSP_2078||hypothetical protein (NCBI)||296, 355|
|RSP_2185||RSP_2185||nuclease (SNase-like) (NCBI)||220, 355|
|RSP_2349||RSP_2349||hypothetical protein (NCBI)||293, 355|
|RSP_2490||RSP_2490||hypothetical protein (NCBI)||220, 355|
|RSP_2500||RSP_2500||hypothetical protein (NCBI)||313, 355|
|RSP_2599||phoB||Phosphate regulon transcriptional regulator, PhoR (NCBI)||84, 155|
|RSP_2600||phoU||phosphate transport system regulatory protein (NCBI)||155, 306|
|RSP_2601||pstB||ABC phosphate transporter, ATPase subunit PstB (NCBI)||155, 306|
|RSP_2602||pstA||ABC phosphate transporter, inner membrane subunit PstA (NCBI)||155, 306|
|RSP_2603||pstC||ABC phosphate transporter, inner membrane subunit PstC (NCBI)||155, 306|
|RSP_2604||pstS||ABC phosphate transporter, periplasmic phosphate-binding protein (NCBI)||155, 306|
|RSP_2988||RSP_2988||Pirin-related protein (NCBI)||155, 238|
|RSP_2989||RSP_2989||hypothetical protein (NCBI)||11, 155|
|RSP_2992||RSP_2992||hypothetical protein (NCBI)||44, 355|
|RSP_2993||RSP_2993||hypothetical protein (NCBI)||19, 355|
|RSP_2994||RSP_2994||hypothetical protein (NCBI)||155, 355|
|RSP_3046||dorC||DMSO/TMAO pentaheme cytochrome c subunit (NCBI)||155, 308|
|RSP_3047||dorB||DMSO-membrane protein (NCBI)||155, 308|
|RSP_3048||dorA||DMSO/TMAO-reductase (NCBI)||155, 308|
|RSP_3049||moeA||Molybdenum cofactor biosynthesis protein (NCBI)||155, 308|
|RSP_3139||RSP_3139||hypothetical protein (NCBI)||313, 355|
|RSP_3389||RSP_3389||Isocitrate/isopropylmalate dehydrogenase / tartrate dehydrogenase (NCBI)||220, 355|
|RSP_3635||RSP_3635||putative adenine-specific DNA methyltransferase (NCBI)||355, 379|
|RSP_3639||RSP_3639||hypothetical protein (NCBI)||313, 355|
|RSP_3666||RSP_3666||putative membrane protein (NCBI)||115, 155|
|RSP_3667||RSP_3667||transcriptional regulator, AraC family with Parallel beta-helix repeat (NCBI)||115, 155|
|RSP_3669||RSP_3669||hypothetical protein (NCBI)||115, 155|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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