Desulfovibrio vulgaris Hildenborough Module 29 Residual: 0.50

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Summary

Residual: 0.50 Score: -35.2347 version: dvh_cmonkey_11_Mar_02

Members

DVU0002 DNA polymerase III subunit beta

Details for DVU0002 - DNA polymerase III subunit beta

GO Terms: GO:0008408, GO:0003677, GO:0009360, GO:0006260, GO:0003887, GO:0005737

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0002

Tuberculist Genomic Region

DVU1666 Elongation factor P

Details for DVU1666 - Elongation factor P

GO Terms: GO:0005737, GO:0043043, GO:0003746

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1666

Tuberculist Genomic Region

DVU0003 DNA gyrase subunit B

Details for DVU0003 - DNA gyrase subunit B

GO Terms: GO:0005524, GO:0003677, GO:0003918, GO:0006265, GO:0006261, GO:0005694, GO:0005737, GO:0000287

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0003

Tuberculist Genomic Region

DVU1889 Phosphoheptose isomerase

Details for DVU1889 - Phosphoheptose isomerase

GO Terms: GO:2001061, GO:0008968, GO:0030246, GO:0005737, GO:0009244, GO:0008270

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1889

Tuberculist Genomic Region

DVU0237 Serine--tRNA ligase

Details for DVU0237 - Serine--tRNA ligase

GO Terms: GO:0005524, GO:0005737, GO:0016260, GO:0097056, GO:0004828, GO:0006434

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0237

Tuberculist Genomic Region

DVU1893 ATP-dependent protease, putative

Details for DVU1893 - ATP-dependent protease, putative

GO Terms: GO:0005524, GO:0004176, GO:0030163, GO:0004252

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1893

Tuberculist Genomic Region

DVU0279 Sulfate permease family protein

Details for DVU0279 - Sulfate permease family protein

GO Terms: GO:0016021, GO:0008271

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0279

Tuberculist Genomic Region

DVU2339 Ribosomal protein L11 methyltransferase, putative

Details for DVU2339 - Ribosomal protein L11 methyltransferase, putative

GO Terms: GO:0008276, GO:0005840

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2339

Tuberculist Genomic Region

DVU0502 Uncharacterized protein

Details for DVU0502 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0502

Tuberculist Genomic Region

DVU3275 Uncharacterized protein

Details for DVU3275 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU3275

Tuberculist Genomic Region

DVU0809 Aspartyl/glutamyl-tRNA

Details for DVU0809 - Aspartyl/glutamyl-tRNA

GO Terms: GO:0005524, GO:0050567, GO:0006450, GO:0006412

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0809

Tuberculist Genomic Region

DVU3307 3-octaprenyl-4-hydroxybenzoate carboxy-lyase

Details for DVU3307 - 3-octaprenyl-4-hydroxybenzoate carboxy-lyase

GO Terms: GO:0016829

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU3307

Tuberculist Genomic Region

DVU0810 Uncharacterized protein

Details for DVU0810 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0810

Tuberculist Genomic Region

DVU3395 Peptidase, M23/M37 family

Details for DVU3395 - Peptidase, M23/M37 family

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU3395

Tuberculist Genomic Region

DVU1195 Lipoprotein, putative

Details for DVU1195 - Lipoprotein, putative

GO Terms: GO:0043165, GO:0019867

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1195

Tuberculist Genomic Region

DVU0004 DNA gyrase subunit A

Details for DVU0004 - DNA gyrase subunit A

GO Terms: GO:0005524, GO:0003677, GO:0003918, GO:0006265, GO:0006261, GO:0005694, GO:0005737

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0004

Tuberculist Genomic Region

DVU1248 Arginine--tRNA ligase

Details for DVU1248 - Arginine--tRNA ligase

GO Terms: GO:0005524, GO:0004814, GO:0006420, GO:0005737

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1248

Tuberculist Genomic Region

DVU0161 Amidophosphoribosyltransferase

Details for DVU0161 - Amidophosphoribosyltransferase

GO Terms: GO:0006189, GO:0004044, GO:0051536, GO:0046872, GO:0009116, GO:0009113

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0161

Tuberculist Genomic Region

DVU1576 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase

Details for DVU1576 - 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase

GO Terms: GO:0050515, GO:0005524, GO:0019288, GO:0016114

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1576

Tuberculist Genomic Region

DVU0162 Carbamoyl-phosphate synthase

Details for DVU0162 - Carbamoyl-phosphate synthase

GO Terms: GO:0044205, GO:0005524, GO:0006526, GO:0004088, GO:0046872

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0162

Tuberculist Genomic Region

DVU1584 RNA polymerase sigma factor

Details for DVU1584 - RNA polymerase sigma factor

GO Terms: GO:0003677, GO:0006352, GO:0003700, GO:0016987

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1584

Tuberculist Genomic Region

DVU1062 Uncharacterized protein

Details for DVU1062 - Uncharacterized protein

GO Terms: GO:0006189

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1062

Tuberculist Genomic Region

DVU1661 Uncharacterized protein

Details for DVU1661 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1661

Tuberculist Genomic Region

Displaying 1 - 23 of 23

Motifs

Motif 1: e-value: 0.67 e-value: 32000

Module Plots

Regulation

Regulator Interaction Influence Weight Other Influences

DVU0682

DNA-binding protein, putative
 up-regulates 0.22

DVU0682

DVU1759

Molybdenum-binding protein, HTH domain
 up-regulates 0.17

DVU1759

DVU1949

Nif-specific regulatory protein
 up-regulates 0.23

DVU1949

DVU2195

Uncharacterized protein
 down-regulates -0.11

DVU2195

DVU2547

Transcriptional regulator, putative
 down-regulates -0.19

DVU2547

DVU3255

Transcriptional regulator, CopG family
 up-regulates 0.12

DVU3255
[field_regulator_taxonomy_regulat_1] down-regulates -0.20

Salt-Stress Ancestor

GO Enrichment

Category: BP
Category GO ID GO Term Annotated Expected Significant p-value
BP GO:1901137 carbohydrate derivative biosynthetic pro... 40 0.54 4 0.0006
BP GO:0090407 organophosphate biosynthetic process 46 0.62 4 0.0010
BP GO:1901135 carbohydrate derivative metabolic proces... 49 0.66 4 0.0013
BP GO:0006796 phosphate-containing compound metabolic ... 50 0.68 4 0.0014
BP GO:0019637 organophosphate metabolic process 50 0.68 4 0.0014
BP GO:0006793 phosphorus metabolic process 51 0.69 4 0.0015
BP GO:0009156 ribonucleoside monophosphate biosyntheti... 23 0.31 3 0.0020
BP GO:0009124 nucleoside monophosphate biosynthetic pr... 24 0.33 3 0.0022
BP GO:0009161 ribonucleoside monophosphate metabolic p... 24 0.33 3 0.0022
BP GO:0009123 nucleoside monophosphate metabolic proce... 25 0.34 3 0.0025
BP GO:0009260 ribonucleotide biosynthetic process 25 0.34 3 0.0025
BP GO:0046390 ribose phosphate biosynthetic process 25 0.34 3 0.0025
BP GO:0009259 ribonucleotide metabolic process 26 0.35 3 0.0028
BP GO:0019693 ribose phosphate metabolic process 26 0.35 3 0.0028
BP GO:0009165 nucleotide biosynthetic process 32 0.43 3 0.0053
BP GO:1901293 nucleoside phosphate biosynthetic proces... 32 0.43 3 0.0053
BP GO:0006753 nucleoside phosphate metabolic process 35 0.47 3 0.0069
BP GO:0009117 nucleotide metabolic process 35 0.47 3 0.0069
BP GO:0006188 IMP biosynthetic process 11 0.15 2 0.0077
BP GO:0006189 'de novo' IMP biosynthetic process 11 0.15 2 0.0077
BP GO:0046040 IMP metabolic process 11 0.15 2 0.0077
BP GO:0034654 nucleobase-containing compound biosynthe... 41 0.56 3 0.0109
BP GO:0055086 nucleobase-containing small molecule met... 42 0.57 3 0.0117
BP GO:0006164 purine nucleotide biosynthetic process 17 0.23 2 0.0184
BP GO:0009127 purine nucleoside monophosphate biosynth... 17 0.23 2 0.0184
BP GO:0009152 purine ribonucleotide biosynthetic proce... 17 0.23 2 0.0184
BP GO:0009168 purine ribonucleoside monophosphate bios... 17 0.23 2 0.0184
BP GO:0072522 purine-containing compound biosynthetic ... 17 0.23 2 0.0184
BP GO:0006163 purine nucleotide metabolic process 18 0.24 2 0.0206
BP GO:0009126 purine nucleoside monophosphate metaboli... 18 0.24 2 0.0206
BP GO:0009150 purine ribonucleotide metabolic process 18 0.24 2 0.0206
BP GO:0009167 purine ribonucleoside monophosphate meta... 18 0.24 2 0.0206
BP GO:1901576 organic substance biosynthetic process 102 1.38 4 0.0220
BP GO:0072521 purine-containing compound metabolic pro... 21 0.28 2 0.0278
BP GO:0044271 cellular nitrogen compound biosynthetic ... 60 0.81 3 0.0322
BP GO:0019438 aromatic compound biosynthetic process 61 0.83 3 0.0337
BP GO:0018130 heterocycle biosynthetic process 67 0.91 3 0.0436
BP GO:1901566 organonitrogen compound biosynthetic pro... 68 0.92 3 0.0454
BP GO:1901362 organic cyclic compound biosynthetic pro... 70 0.95 3 0.0491
Category: MF
Category GO ID GO Term Annotated Expected Significant p-value
MF GO:0005524 ATP binding 301 2.58 6 0.0251
MF GO:0008276 protein methyltransferase activity 3 0.03 1 0.0256
MF GO:0032559 adenyl ribonucleotide binding 303 2.60 6 0.0259
MF GO:0030554 adenyl nucleotide binding 304 2.61 6 0.0263
MF GO:0008408 3'-5' exonuclease activity 4 0.03 1 0.0339
MF GO:0035639 purine ribonucleoside triphosphate bindi... 325 2.79 6 0.0361
MF GO:0001882 nucleoside binding 327 2.81 6 0.0372
MF GO:0001883 purine nucleoside binding 327 2.81 6 0.0372
MF GO:0032549 ribonucleoside binding 327 2.81 6 0.0372
MF GO:0032550 purine ribonucleoside binding 327 2.81 6 0.0372
MF GO:0032555 purine ribonucleotide binding 332 2.85 6 0.0399
MF GO:0017076 purine nucleotide binding 333 2.86 6 0.0405
MF GO:0032553 ribonucleotide binding 345 2.96 6 0.0477
MF GO:0097367 carbohydrate derivative binding 345 2.96 6 0.0477

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