Methanococcus maripaludis S2 Module 52 Residual: 0.39

×

Error message

  • Unable to create CTools CSS cache directory. Check the permissions on your files directory.
  • Unable to create CTools CSS cache directory. Check the permissions on your files directory.

Summary

Residual: 0.39 Score: -13.5825 version: mmp_cmonkey_11_Oct_11

Members

MMP0013 argininosuccinate lyase (NCBI)

Details for MMP0013 - argininosuccinate lyase (NCBI)

GO Terms: GO:0042450, GO:0004056

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0013

Tuberculist Genomic Region

MMP1093 4'-phosphopantetheine adenylyltransferase (NCBI)

Details for MMP1093 - 4'-phosphopantetheine adenylyltransferase (NCBI)

GO Terms: GO:0009058, GO:0004595, GO:0005524

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1093

Tuberculist Genomic Region

MMP0202 conserved hypothetical protein (NCBI)

Details for MMP0202 - conserved hypothetical protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0202

Tuberculist Genomic Region

MMP1120 ATP-binding protein, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal:Bacterial sensor protein C-term... (NCBI)

Details for MMP1120 - ATP-binding protein, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal:Bacterial sensor protein C-term... (NCBI)

GO Terms: GO:0018106, GO:0007165, GO:0016020, GO:0000155, GO:0005524

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1120

Tuberculist Genomic Region

MMP0203 conserved hypothetical protein (NCBI)

Details for MMP0203 - conserved hypothetical protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0203

Tuberculist Genomic Region

MMP1253 Protein of unknown function DUF89 (NCBI)

Details for MMP1253 - Protein of unknown function DUF89 (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1253

Tuberculist Genomic Region

MMP0262 conserved hypothetical protein (NCBI)

Details for MMP0262 - conserved hypothetical protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0262

Tuberculist Genomic Region

MMP1312 conserved hypothetical protein (NCBI)

Details for MMP1312 - conserved hypothetical protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1312

Tuberculist Genomic Region

MMP0355 conserved hypothetical protein (NCBI)

Details for MMP0355 - conserved hypothetical protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0355

Tuberculist Genomic Region

MMP1314 Phosphoesterase, RecJ-like:RNA binding S1:OB-fold nucleic acid binding domain Related protein (NCBI)

Details for MMP1314 - Phosphoesterase, RecJ-like:RNA binding S1:OB-fold nucleic acid binding domain Related protein (NCBI)

GO Terms: GO:0006457, GO:0003723, GO:0031072, GO:0051082, GO:0016787, GO:0030145

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1314

Tuberculist Genomic Region

MMP0377 isoleucyl-tRNA synthetase related (NCBI)

Details for MMP0377 - isoleucyl-tRNA synthetase related (NCBI)

GO Terms: GO:0006260, GO:0003677, GO:0003887

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0377

Tuberculist Genomic Region

MMP0025 hypothetical protein (NCBI)

Details for MMP0025 - hypothetical protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0025

Tuberculist Genomic Region

MMP0410 Phosphoribosyltransferase:Purine/pyrimidine phosphoribosyl transferase (NCBI)

Details for MMP0410 - Phosphoribosyltransferase:Purine/pyrimidine phosphoribosyl transferase (NCBI)

GO Terms: GO:0009116, GO:0009165, GO:0000287, GO:0004749

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0410

Tuberculist Genomic Region

MMP0376 conserved hypothetical protein (NCBI)

Details for MMP0376 - conserved hypothetical protein (NCBI)

GO Terms: GO:0006310, GO:0006260, GO:0006281, GO:0003910, GO:0005524

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0376

Tuberculist Genomic Region

MMP0446 Nitrogen fixation-related protein (NCBI)

Details for MMP0446 - Nitrogen fixation-related protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0446

Tuberculist Genomic Region

MMP0378 Atrazine chlorohydrolase related protein (NCBI)

Details for MMP0378 - Atrazine chlorohydrolase related protein (NCBI)

GO Terms: GO:0016810

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0378

Tuberculist Genomic Region

MMP0488 Low molecular weight phosphotyrosine protein phosphatase (NCBI)

Details for MMP0488 - Low molecular weight phosphotyrosine protein phosphatase (NCBI)

GO Terms: GO:0006470, GO:0004725

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0488

Tuberculist Genomic Region

MMP0409 conserved hypothetical archaeal protein (NCBI)

Details for MMP0409 - conserved hypothetical archaeal protein (NCBI)

GO Terms: GO:0006118, GO:0016614, GO:0050660

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0409

Tuberculist Genomic Region

MMP0489 conserved hypothetical protein (NCBI)

Details for MMP0489 - conserved hypothetical protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0489

Tuberculist Genomic Region

MMP0218 conserved hypothetical protein (NCBI)

Details for MMP0218 - conserved hypothetical protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0218

Tuberculist Genomic Region

MMP0498 putative uncharacterized membrane protein, ortholog YYAS B.subtilis (NCBI)

Details for MMP0498 - putative uncharacterized membrane protein, ortholog YYAS B.subtilis (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0498

Tuberculist Genomic Region

MMP0655 hypothetical protein (NCBI)

Details for MMP0655 - hypothetical protein (NCBI)

GO Terms: GO:0006790

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0655

Tuberculist Genomic Region

MMP0561 Carboxymuconolactone decarboxylase:Alkylhydroperoxidase AhpD core domain (NCBI)

Details for MMP0561 - Carboxymuconolactone decarboxylase:Alkylhydroperoxidase AhpD core domain (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0561

Tuberculist Genomic Region

MMP1313 flap endonuclease (NCBI)

Details for MMP1313 - flap endonuclease (NCBI)

GO Terms: GO:0006281, GO:0005634, GO:0004518, GO:0003677

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1313

Tuberculist Genomic Region

MMP0617 DNA repair and recombination protein radB (NCBI)

Details for MMP0617 - DNA repair and recombination protein radB (NCBI)

GO Terms: GO:0006281, GO:0006310, GO:0003684, GO:0008094, GO:0005524

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0617

Tuberculist Genomic Region

MMP1117 conserved hypothetical protein (NCBI)

Details for MMP1117 - conserved hypothetical protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1117

Tuberculist Genomic Region

MMP0811 hypothetical protein (NCBI)

Details for MMP0811 - hypothetical protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP0811

Tuberculist Genomic Region

MMP1648 conserved hypothetical protein (NCBI)

Details for MMP1648 - conserved hypothetical protein (NCBI)

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: MMP1648

Tuberculist Genomic Region

Displaying 1 - 28 of 28

Motifs

Motif 1: e-value: 22 e-value: 78

Module Plots

Regulation

Regulator Interaction Influence Weight Other Influences

MMP1303

Sensory transduction histidine kinase (NCBI)
 down-regulates -0.40

MMP1303

MMP1052

conserved hypothetical archaeal protein (NCBI)

Formate

 down-regulates -0.21

MMP1052

Formate

MMP1052

conserved hypothetical archaeal protein (NCBI)
 up-regulates 0.17

MMP1052

MMP1499

conserved hypothetical archaeal protein (NCBI)
 up-regulates 0.17

MMP1499

MMP1304

Response regulator receiver (NCBI)
 down-regulates -0.16

MMP1304

MMP1447

Cro repressor family Helix-turn-helix motif containing protein (NCBI)
 down-regulates -0.15

MMP1447

GO Enrichment

Category: BP
Category GO ID GO Term Annotated Expected Significant p-value
BP GO:0009084 glutamine family amino acid biosynthetic... 3 0.05 1 0.0460
Category: MF
Category GO ID GO Term Annotated Expected Significant p-value
MF GO:0016788 hydrolase activity, acting on ester bond... 19 0.27 2 0.0280
MF GO:0016209 antioxidant activity 3 0.04 1 0.0420
MF GO:0016684 oxidoreductase activity, acting on perox... 3 0.04 1 0.0420
MF GO:0016791 phosphatase activity 3 0.04 1 0.0420
MF GO:0042578 phosphoric ester hydrolase activity 3 0.04 1 0.0420

Comments

Log in to post comments