Desulfovibrio vulgaris Hildenborough Module 64 Residual: 0.48

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Summary

Residual: 0.48 Score: -39.4422 version: dvh_cmonkey_11_Mar_02

Members

DVU0830 Phosphocarrier protein HPr

Details for DVU0830 - Phosphocarrier protein HPr

GO Terms: GO:0005737, GO:0016301, GO:0009401

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0830

Tuberculist Genomic Region

DVU2536 50S ribosomal protein L35

Details for DVU2536 - 50S ribosomal protein L35

GO Terms: GO:0005840, GO:0003735, GO:0006412

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2536

Tuberculist Genomic Region

DVU0831 PTS system, IID component, putative

Details for DVU0831 - PTS system, IID component, putative

GO Terms: GO:0016021, GO:0009401

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0831

Tuberculist Genomic Region

DVU3090 Outer membrane protein, OMPP1/FadL/TodX family

Details for DVU3090 - Outer membrane protein, OMPP1/FadL/TodX family

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU3090

Tuberculist Genomic Region

DVU1042 Sec-independent protein translocase protein TatB

Details for DVU1042 - Sec-independent protein translocase protein TatB

GO Terms: GO:0033281, GO:0005887, GO:0009306, GO:0008320, GO:0043953

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1042

Tuberculist Genomic Region

DVU3245 Transcription elongation factor GreA

Details for DVU3245 - Transcription elongation factor GreA

GO Terms: GO:0003677, GO:0032784, GO:0006351

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU3245

Tuberculist Genomic Region

DVU1043 GMP synthase [glutamine-hydrolyzing]

Details for DVU1043 - GMP synthase [glutamine-hydrolyzing]

GO Terms: GO:0005524, GO:0006177, GO:0003922, GO:0006529, GO:0004066, GO:0006541, GO:0016462

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1043

Tuberculist Genomic Region

DVU0002 DNA polymerase III subunit beta

Details for DVU0002 - DNA polymerase III subunit beta

GO Terms: GO:0008408, GO:0003677, GO:0009360, GO:0006260, GO:0003887, GO:0005737

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0002

Tuberculist Genomic Region

DVU1249 Malonyl CoA-acyl carrier protein transacylase

Details for DVU1249 - Malonyl CoA-acyl carrier protein transacylase

GO Terms: GO:0004314

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1249

Tuberculist Genomic Region

DVU0003 DNA gyrase subunit B

Details for DVU0003 - DNA gyrase subunit B

GO Terms: GO:0005524, GO:0003677, GO:0003918, GO:0006265, GO:0006261, GO:0005694, GO:0005737, GO:0000287

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0003

Tuberculist Genomic Region

DVU1250 Ribosomal RNA small subunit methyltransferase G

Details for DVU1250 - Ribosomal RNA small subunit methyltransferase G

GO Terms: GO:0005737, GO:0070043

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1250

Tuberculist Genomic Region

DVU0285 Imidazole glycerol phosphate synthase subunit HisH

Details for DVU0285 - Imidazole glycerol phosphate synthase subunit HisH

GO Terms: GO:0005737, GO:0006541, GO:0000105, GO:0000107

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0285

Tuberculist Genomic Region

DVU1274 Uncharacterized protein

Details for DVU1274 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1274

Tuberculist Genomic Region

DVU0501 Uncharacterized protein

Details for DVU0501 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0501

Tuberculist Genomic Region

DVU1841 Fructose-1,6-bisphosphatase class 1

Details for DVU1841 - Fructose-1,6-bisphosphatase class 1

GO Terms: GO:0005737, GO:0042132, GO:0006094, GO:0000287

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1841

Tuberculist Genomic Region

DVU0505 tRNA pseudouridine synthase B

Details for DVU0505 - tRNA pseudouridine synthase B

GO Terms: GO:0003723, GO:0006396, GO:0009982, GO:0031119

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0505

Tuberculist Genomic Region

DVU2225 Acetyl-CoA carboxylase, carboxyl transferase, alpha/beta subunit

Details for DVU2225 - Acetyl-CoA carboxylase, carboxyl transferase, alpha/beta subunit

GO Terms: GO:0003989, GO:0009317, GO:0006633, GO:0016740

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2225

Tuberculist Genomic Region

DVU1078 R3H domain protein

Details for DVU1078 - R3H domain protein

GO Terms: GO:0003676

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1078

Tuberculist Genomic Region

DVU2332 Pyrroline-5-carboxylate reductase

Details for DVU2332 - Pyrroline-5-carboxylate reductase

GO Terms: GO:0006561, GO:0004735

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2332

Tuberculist Genomic Region

DVU2904 Dual-specificity RNA methyltransferase RlmN

Details for DVU2904 - Dual-specificity RNA methyltransferase RlmN

GO Terms: GO:0051539, GO:0005737, GO:0046872, GO:0070040, GO:0070475, GO:0019843, GO:0002935, GO:0000049

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2904

Tuberculist Genomic Region

DVU2333 Nucleoside diphosphate kinase

Details for DVU2333 - Nucleoside diphosphate kinase

GO Terms: GO:0005524, GO:0006241, GO:0006183, GO:0006228, GO:0005737, GO:0046872, GO:0004550

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2333

Tuberculist Genomic Region

Displaying 1 - 21 of 21

Motifs

Motif 1: e-value: 65 e-value: 290

Module Plots

Regulation

Regulator Interaction Influence Weight Other Influences

DVU0621

Sigma-54 dependent DNA-binding response regulator
 down-regulates -0.10

DVU0621

DVU1156

Sigma-54 dependent transcriptional regulator, putative/response regulator
 down-regulates -0.12

DVU1156

DVU1547

Sensory box protein
 down-regulates -0.11

DVU1547

DVU3111

Transcriptional regulator, Crp/Fnr family
 up-regulates 0.15

DVU3111
[field_regulator_taxonomy_regulat_1] down-regulates -0.11

Salt-Stress Ancestor

GO Enrichment

Category: BP
Category GO ID GO Term Annotated Expected Significant p-value
BP GO:0009084 glutamine family amino acid biosynthetic... 6 0.02 1 0.0163
BP GO:0009064 glutamine family amino acid metabolic pr... 9 0.02 1 0.0244
BP GO:1901607 alpha-amino acid biosynthetic process 15 0.04 1 0.0407
BP GO:0008652 cellular amino acid biosynthetic process 17 0.05 1 0.0461
BP GO:0016053 organic acid biosynthetic process 18 0.05 1 0.0488
BP GO:0046394 carboxylic acid biosynthetic process 18 0.05 1 0.0488
Category: CC
Category GO ID GO Term Annotated Expected Significant p-value
CC GO:0005737 cytoplasm 86 1.53 5 0.0066
CC GO:0005623 cell 145 2.58 6 0.0114
CC GO:0044464 cell part 145 2.58 6 0.0114
CC GO:0005622 intracellular 104 1.85 5 0.0157
CC GO:0044424 intracellular part 104 1.85 5 0.0157
Category: MF
Category GO ID GO Term Annotated Expected Significant p-value
MF GO:0004312 fatty acid synthase activity 4 0.03 1 0.0309
MF GO:0008408 3'-5' exonuclease activity 4 0.03 1 0.0309
MF GO:0004527 exonuclease activity 6 0.05 1 0.0460

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