Desulfovibrio vulgaris Hildenborough Module 184 Residual: 0.49

×

Error message

  • Unable to create CTools CSS cache directory. Check the permissions on your files directory.
  • Unable to create CTools CSS cache directory. Check the permissions on your files directory.

Summary

Residual: 0.49 Score: -48.521 version: dvh_cmonkey_11_Mar_02

Members

DVU0044 Flagellar biosynthetic protein fliP

Details for DVU0044 - Flagellar biosynthetic protein fliP

GO Terms: GO:0016021, GO:0009306

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0044

Tuberculist Genomic Region

DVU0516 Flagellar P-ring protein

Details for DVU0516 - Flagellar P-ring protein

GO Terms: GO:0009428, GO:0071973, GO:0030288, GO:0005198

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0516

Tuberculist Genomic Region

DVU0047 Flagellar protein FliL

Details for DVU0047 - Flagellar protein FliL

GO Terms: GO:0009425, GO:0071973, GO:0006935

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0047

Tuberculist Genomic Region

DVU0517 Peptidase, M23/M37 family

Details for DVU0517 - Peptidase, M23/M37 family

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0517

Tuberculist Genomic Region

DVU0521 Carbon storage regulator homolog

Details for DVU0521 - Carbon storage regulator homolog

GO Terms: GO:0003723, GO:0006402, GO:0006109

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0521

Tuberculist Genomic Region

DVU0519 Flagellar hook-associated protein FlgK, putative

Details for DVU0519 - Flagellar hook-associated protein FlgK, putative

GO Terms: GO:0044780, GO:0009424, GO:0071973, GO:0005198

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0519

Tuberculist Genomic Region

DVU0522 Flagellar assembly factor FliW

Details for DVU0522 - Flagellar assembly factor FliW

GO Terms: GO:0044780, GO:0005737

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0522

Tuberculist Genomic Region

DVU0520 Flagellar hook-associated protein FlgL, putative

Details for DVU0520 - Flagellar hook-associated protein FlgL, putative

GO Terms: GO:0009424, GO:0071973, GO:0005198

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0520

Tuberculist Genomic Region

DVU0046 Flagellar motor switch protein FliN

Details for DVU0046 - Flagellar motor switch protein FliN

GO Terms: GO:0009425, GO:0071973, GO:0006935, GO:0016020, GO:0003774

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0046

Tuberculist Genomic Region

DVU0858 Lipoprotein, putative

Details for DVU0858 - Lipoprotein, putative

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0858

Tuberculist Genomic Region

DVU0310 Flagellum-specific ATP synthase FliI

Details for DVU0310 - Flagellum-specific ATP synthase FliI

GO Terms: GO:0005524, GO:0016887, GO:0009058, GO:0005737, GO:0030254, GO:0030257

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0310

Tuberculist Genomic Region

DVU0862 Uncharacterized protein

Details for DVU0862 - Uncharacterized protein

GO Terms: GO:0009288

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0862

Tuberculist Genomic Region

DVU0311 Flagellar assembly protein FliH, putative

Details for DVU0311 - Flagellar assembly protein FliH, putative

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0311

Tuberculist Genomic Region

DVU0863 Flagellar hook-associated protein 2, putative

Details for DVU0863 - Flagellar hook-associated protein 2, putative

GO Terms: GO:0009424, GO:0007155

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0863

Tuberculist Genomic Region

DVU0312 Flagellar motor switch protein FliG

Details for DVU0312 - Flagellar motor switch protein FliG

GO Terms: GO:0009288, GO:0071973, GO:0006935, GO:0003774

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0312

Tuberculist Genomic Region

DVU0913 Uncharacterized protein

Details for DVU0913 - Uncharacterized protein

GO Terms: GO:0009288, GO:0071973, GO:0006935, GO:0016020, GO:0003774

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0913

Tuberculist Genomic Region

DVU0313 Flagellar M-ring protein

Details for DVU0313 - Flagellar M-ring protein

GO Terms: GO:0009431, GO:0071973, GO:0003774

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0313

Tuberculist Genomic Region

DVU2211 Uncharacterized protein

Details for DVU2211 - Uncharacterized protein

GO Terms: GO:0003676, GO:0008270

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2211

Tuberculist Genomic Region

DVU0314 Flagellar hook-basal body complex protein FliE

Details for DVU0314 - Flagellar hook-basal body complex protein FliE

GO Terms: GO:0009425, GO:0071973, GO:0003774, GO:0005198

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0314

Tuberculist Genomic Region

DVU2232 Uncharacterized protein

Details for DVU2232 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2232

Tuberculist Genomic Region

DVU0315 Flagellar basal-body rod protein FlgC

Details for DVU0315 - Flagellar basal-body rod protein FlgC

GO Terms: GO:0030694, GO:0071973

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0315

Tuberculist Genomic Region

DVU3001 Conserved domain protein

Details for DVU3001 - Conserved domain protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU3001

Tuberculist Genomic Region

DVU0409 Uncharacterized protein

Details for DVU0409 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0409

Tuberculist Genomic Region

DVU3003 Radical SAM domain protein

Details for DVU3003 - Radical SAM domain protein

GO Terms: GO:0051539, GO:0003824, GO:0046872

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU3003

Tuberculist Genomic Region

DVU0512 Flagellar basal-body rod protein, putative

Details for DVU0512 - Flagellar basal-body rod protein, putative

GO Terms: GO:0009288, GO:0044781, GO:0071973

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0512

Tuberculist Genomic Region

DVU3018 Radical SAM domain protein

Details for DVU3018 - Radical SAM domain protein

GO Terms: GO:0003824, GO:0051536

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU3018

Tuberculist Genomic Region

DVU0513 Flagellar basal-body rod protein FlgG

Details for DVU0513 - Flagellar basal-body rod protein FlgG

GO Terms: GO:0009426, GO:0044781, GO:0071973

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0513

Tuberculist Genomic Region

DVU3019 Radical SAM/B12 binding domain protein

Details for DVU3019 - Radical SAM/B12 binding domain protein

GO Terms: GO:0003824, GO:0031419, GO:0051536, GO:0046872

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU3019

Tuberculist Genomic Region

DVU0515 Flagellar L-ring protein

Details for DVU0515 - Flagellar L-ring protein

GO Terms: GO:0009427, GO:0071973, GO:0009279, GO:0003774

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0515

Tuberculist Genomic Region

DVU3020 Uncharacterized protein

Details for DVU3020 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU3020

Tuberculist Genomic Region

Displaying 1 - 30 of 30

Motifs

Motif 1: e-value: 2.2 e-value: 4100

Module Plots

Regulation

Regulator Interaction Influence Weight Other Influences
[field_regulator_taxonomy_regulat_1] up-regulates 0.11

Acetate

DVU0277

Transcriptional regulator, AraC family
 up-regulates 0.10

DVU0277

DVU1584

RNA polymerase sigma factor
 down-regulates -0.14

DVU1584

DVU2106

Sigma-54 dependent transcriptional regulator
 down-regulates -0.12

DVU2106

DVU2359

Sigma-54 dependent transcriptional regulator
 down-regulates -0.14

DVU2359

DVU2894

Sigma-54 dependent transcriptional regulator
 up-regulates 0.11

DVU2894

DVU2960

Sigma-54 dependent transcriptional regulator
 up-regulates 0.14

DVU2960
[field_regulator_taxonomy_regulat_1] up-regulates 0.65

Nitrite
[field_regulator_taxonomy_regulat_1] down-regulates -6.06

Oxygen

GO Enrichment

Category: BP
Category GO ID GO Term Annotated Expected Significant p-value
BP GO:0006996 organelle organization 6 0.03 2 0.0002
BP GO:0030031 cell projection assembly 6 0.03 2 0.0002
BP GO:0044780 bacterial-type flagellum assembly 6 0.03 2 0.0002
BP GO:0070925 organelle assembly 6 0.03 2 0.0002
BP GO:0030030 cell projection organization 7 0.04 2 0.0003
BP GO:0044781 bacterial-type flagellum organization 7 0.04 2 0.0003
BP GO:0022607 cellular component assembly 18 0.10 2 0.0023
BP GO:0044085 cellular component biogenesis 21 0.11 2 0.0031
BP GO:0016043 cellular component organization 28 0.15 2 0.0056
BP GO:0071840 cellular component organization or bioge... 31 0.17 2 0.0069
Category: CC
Category GO ID GO Term Annotated Expected Significant p-value
CC GO:0005622 intracellular 104 3.97 10 0.0010
CC GO:0044424 intracellular part 104 3.97 10 0.0010

Comments

Log in to post comments