Desulfovibrio vulgaris Hildenborough Module 223 Residual: 0.49

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Summary

Residual: 0.49 Score: -30.8928 version: dvh_cmonkey_11_Mar_02

Members

DVU0135 Uncharacterized protein

Details for DVU0135 - Uncharacterized protein

GO Terms: GO:0008033

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0135

Tuberculist Genomic Region

DVU0323 Bifunctional protein FolD

Details for DVU0323 - Bifunctional protein FolD

GO Terms: GO:0009396, GO:0000105, GO:0004477, GO:0009086, GO:0004488, GO:0006164, GO:0035999

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0323

Tuberculist Genomic Region

DVU0660 Phosphoesterase

Details for DVU0660 - Phosphoesterase

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0660

Tuberculist Genomic Region

DVU0414 NADP-dependent malic enzyme-related protein

Details for DVU0414 - NADP-dependent malic enzyme-related protein

GO Terms: GO:0051287, GO:0004471, GO:0006108, GO:0046872

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0414

Tuberculist Genomic Region

DVU0724 Sodium/alanine symporter family protein

Details for DVU0724 - Sodium/alanine symporter family protein

GO Terms: GO:0015655, GO:0016020

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0724

Tuberculist Genomic Region

DVU0726 Queuine tRNA-ribosyltransferase

Details for DVU0726 - Queuine tRNA-ribosyltransferase

GO Terms: GO:0046872, GO:0008479, GO:0008616

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0726

Tuberculist Genomic Region

DVU0796 Histidinol dehydrogenase

Details for DVU0796 - Histidinol dehydrogenase

GO Terms: GO:0051287, GO:0000105, GO:0004399, GO:0008270

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0796

Tuberculist Genomic Region

DVU0795 Phosphoribosylaminoimidazole-succinocarboxamide synthase

Details for DVU0795 - Phosphoribosylaminoimidazole-succinocarboxamide synthase

GO Terms: GO:0006189, GO:0005524, GO:0004639

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0795

Tuberculist Genomic Region

DVU1060 Glycosyl transferase, group 1 family protein

Details for DVU1060 - Glycosyl transferase, group 1 family protein

GO Terms: GO:0009058, GO:0016740

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1060

Tuberculist Genomic Region

DVU1029 Histidinol-phosphate aminotransferase

Details for DVU1029 - Histidinol-phosphate aminotransferase

GO Terms: GO:0080130, GO:0000105, GO:0004400, GO:0030170

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1029

Tuberculist Genomic Region

DVU1220 Nitroreductase family protein

Details for DVU1220 - Nitroreductase family protein

GO Terms: GO:0051536, GO:0016491

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1220

Tuberculist Genomic Region

DVU1091 Uncharacterized protein

Details for DVU1091 - Uncharacterized protein

GO Terms: GO:0005524, GO:0004810, GO:0008033

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1091

Tuberculist Genomic Region

DVU1693 Glutamyl-Q tRNA

Details for DVU1693 - Glutamyl-Q tRNA

GO Terms: GO:0005524, GO:0004812, GO:0005737, GO:0006418, GO:0006400, GO:0008270

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1693

Tuberculist Genomic Region

DVU1540 Formyltetrahydrofolate deformylase

Details for DVU1540 - Formyltetrahydrofolate deformylase

GO Terms: GO:0006189, GO:0016597, GO:0008864, GO:0016742

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1540

Tuberculist Genomic Region

DVU1827 Acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase family protein

Details for DVU1827 - Acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase family protein

GO Terms: GO:0016787

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1827

Tuberculist Genomic Region

DVU2055 Methionine--tRNA ligase

Details for DVU2055 - Methionine--tRNA ligase

GO Terms: GO:0005524, GO:0005737, GO:0046872, GO:0004825, GO:0006431, GO:0000049

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2055

Tuberculist Genomic Region

DVU1942 DAK2 domain/degV family protein

Details for DVU1942 - DAK2 domain/degV family protein

GO Terms: GO:0006071, GO:0004371, GO:0008289

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1942

Tuberculist Genomic Region

DVU2210 TPR domain protein

Details for DVU2210 - TPR domain protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2210

Tuberculist Genomic Region

DVU1978 Na+/H+ antiporter family protein

Details for DVU1978 - Na+/H+ antiporter family protein

GO Terms: GO:0016021

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU1978

Tuberculist Genomic Region

DVU2471 Oxidoreductase, selenocysteine-containing

Details for DVU2471 - Oxidoreductase, selenocysteine-containing

GO Terms: GO:0051536

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2471

Tuberculist Genomic Region

DVU2436 Uncharacterized protein

Details for DVU2436 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2436

Tuberculist Genomic Region

DVU2493 Iron-sulfur cluster-binding protein

Details for DVU2493 - Iron-sulfur cluster-binding protein

GO Terms: GO:0051536

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2493

Tuberculist Genomic Region

DVU3389 DNA topoisomerase 1

Details for DVU3389 - DNA topoisomerase 1

GO Terms: GO:0003677, GO:0003917, GO:0006265, GO:0005694, GO:0000287

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU3389

Tuberculist Genomic Region

DVU2552 Glutamate--tRNA ligase

Details for DVU2552 - Glutamate--tRNA ligase

GO Terms: GO:0005524, GO:0005737, GO:0004818, GO:0006424, GO:0000049

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2552

Tuberculist Genomic Region

DVU0136 Uncharacterized protein

Details for DVU0136 - Uncharacterized protein

GO Terms: NA

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0136

Tuberculist Genomic Region

DVU2892 GTP cyclohydrolase FolE2

Details for DVU2892 - GTP cyclohydrolase FolE2

GO Terms: GO:0035998, GO:0003934

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU2892

Tuberculist Genomic Region

DVU0141 Peptidase, M50 family

Details for DVU0141 - Peptidase, M50 family

GO Terms: GO:0004222

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU0141

Tuberculist Genomic Region

DVU3208 Glycerol-3-phosphate acyltransferase

Details for DVU3208 - Glycerol-3-phosphate acyltransferase

GO Terms: GO:0043772, GO:0016021, GO:0008654, GO:0005886

PATRIC Pathways: NA

Essentiality: Griffin Essential: NA | In vitro Essential: NA | In vivo Essential: NA

Go to Gene Page: DVU3208

Tuberculist Genomic Region

Displaying 1 - 28 of 28

Motifs

Motif 1: e-value: 0.012 e-value: 8400

Module Plots

Regulation

Regulator Interaction Influence Weight Other Influences

DVU1788

RNA polymerase sigma factor RpoD
up-regulates 0.10

DVU1788

DVU2909

Transcriptional regulator, MarR family
 up-regulates 0.23

DVU2909

DVUA0143

Nif-specific regulatory protein
 down-regulates -0.12

DVUA0143

GO Enrichment

Category: BP
Category GO ID GO Term Annotated Expected Significant p-value
BP GO:0034641 cellular nitrogen compound metabolic pro... 92 1.75 5 0.0120
BP GO:0006725 cellular aromatic compound metabolic pro... 94 1.78 5 0.0132
BP GO:0044271 cellular nitrogen compound biosynthetic ... 60 1.14 4 0.0152
BP GO:0006188 IMP biosynthetic process 11 0.21 2 0.0157
BP GO:0006189 'de novo' IMP biosynthetic process 11 0.21 2 0.0157
BP GO:0046040 IMP metabolic process 11 0.21 2 0.0157
BP GO:0051188 cofactor biosynthetic process 11 0.21 2 0.0157
BP GO:0046483 heterocycle metabolic process 98 1.86 5 0.0160
BP GO:0019438 aromatic compound biosynthetic process 61 1.16 4 0.0161
BP GO:1901360 organic cyclic compound metabolic proces... 101 1.92 5 0.0183
BP GO:0051186 cofactor metabolic process 12 0.23 2 0.0186
BP GO:0018130 heterocycle biosynthetic process 67 1.27 4 0.0227
BP GO:1901566 organonitrogen compound biosynthetic pro... 68 1.29 4 0.0239
BP GO:1901362 organic cyclic compound biosynthetic pro... 70 1.33 4 0.0265
BP GO:0008152 metabolic process 225 4.27 7 0.0302
BP GO:0044237 cellular metabolic process 163 3.09 6 0.0311
BP GO:0006164 purine nucleotide biosynthetic process 17 0.32 2 0.0367
BP GO:0009127 purine nucleoside monophosphate biosynth... 17 0.32 2 0.0367
BP GO:0009152 purine ribonucleotide biosynthetic proce... 17 0.32 2 0.0367
BP GO:0009168 purine ribonucleoside monophosphate bios... 17 0.32 2 0.0367
BP GO:0072522 purine-containing compound biosynthetic ... 17 0.32 2 0.0367
BP GO:0006163 purine nucleotide metabolic process 18 0.34 2 0.0409
BP GO:0009126 purine nucleoside monophosphate metaboli... 18 0.34 2 0.0409
BP GO:0009150 purine ribonucleotide metabolic process 18 0.34 2 0.0409
BP GO:0009167 purine ribonucleoside monophosphate meta... 18 0.34 2 0.0409
BP GO:0090407 organophosphate biosynthetic process 46 0.87 3 0.0443
BP GO:0071704 organic substance metabolic process 177 3.36 6 0.0486
Category: MF
Category GO ID GO Term Annotated Expected Significant p-value
MF GO:0051287 NAD binding 12 0.15 2 0.0090
MF GO:0005342 organic acid transmembrane transporter a... 4 0.05 1 0.0490
MF GO:0008514 organic anion transmembrane transporter ... 4 0.05 1 0.0490
MF GO:0015171 amino acid transmembrane transporter act... 4 0.05 1 0.0490
MF GO:0046943 carboxylic acid transmembrane transporte... 4 0.05 1 0.0490

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