Desulfovibrio vulgaris Hildenborough Module 328 Residual: 0.34 | Syntrophy Portal

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Summary

Residual: 0.34 Score: -96.4635 version: dvh_cmonkey_11_Mar_02

Members

DVUA0015 Nitrogenase iron protein Details for DVUA0015 - Nitrogenase iron protein GO Terms: GO:0051539, GO:0005524, GO:0018697, GO:0046872, GO:0016612, GO:0009399, GO:0016163 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVUA0015 Tuberculist Genomic Region	DVUA0039 Chain length determinant family protein Details for DVUA0039 - Chain length determinant family protein GO Terms: GO:0009103, GO:0016020 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVUA0039 Tuberculist Genomic Region
DVUA0051 Glycosyl transferase, group 1 family protein Details for DVUA0051 - Glycosyl transferase, group 1 family protein GO Terms: GO:0009058, GO:0016740 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVUA0051 Tuberculist Genomic Region	DVUA0040 Polysaccharide biosynthesis protein, putative Details for DVUA0040 - Polysaccharide biosynthesis protein, putative GO Terms: GO:0045226 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVUA0040 Tuberculist Genomic Region
DVU0215 Tail protein, putative Details for DVU0215 - Tail protein, putative GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU0215 Tuberculist Genomic Region	DVUA0042 Lipoprotein, putative Details for DVUA0042 - Lipoprotein, putative GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVUA0042 Tuberculist Genomic Region
DVU2731 Tail fiber assembly protein, putative Details for DVU2731 - Tail fiber assembly protein, putative GO Terms: NA PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVU2731 Tuberculist Genomic Region	DVUA0065 Histidine kinase Details for DVUA0065 - Histidine kinase GO Terms: GO:0005524, GO:0016020, GO:0000155 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVUA0065 Tuberculist Genomic Region
DVUA0013 Nitrogen regulatory protein P-II Details for DVUA0013 - Nitrogen regulatory protein P-II GO Terms: GO:0030234, GO:0006808, GO:0006355, GO:0006351 PATRIC Pathways: NA Essentiality: Griffin Essential: NA \| In vitro Essential: NA \| In vivo Essential: NA Go to Gene Page: DVUA0013 Tuberculist Genomic Region

Motifs

Motif 1:

e-value: 370 Motif 2:

e-value: 1200

Module Median Expression Profiles

Module Plots

Regulation

Regulator	Interaction	Influence Weight	Other Influences
DVU0525 Transcriptional regulator, MarR family	up-regulates	0.28	DVU0525
DVU0539 Sigma-54 dependent DNA-binding response regulator	up-regulates	0.46	DVU0539
DVU1063 Transcriptional regulatory protein	up-regulates	0.15	DVU1063
DVU1419 Sigma-54 dependent transcriptional regulator/response regulator	down-regulates	-0.11	DVU1419
DVU1517 Transcriptional regulator cII, putative	up-regulates	0.11	DVU1517
DVU2532 Transcriptional regulator, MerR family	down-regulates	-0.17	DVU2532

GO Enrichment

Category: BP
Category	GO ID	GO Term	Annotated	Expected	Significant	p-value
BP	GO:0000271	polysaccharide biosynthetic process	7	0.06	2	0.0009
BP	GO:0005976	polysaccharide metabolic process	7	0.06	2	0.0009
BP	GO:0033692	cellular polysaccharide biosynthetic pro...	7	0.06	2	0.0009
BP	GO:0034637	cellular carbohydrate biosynthetic proce...	7	0.06	2	0.0009
BP	GO:0044264	cellular polysaccharide metabolic proces...	7	0.06	2	0.0009
BP	GO:0016051	carbohydrate biosynthetic process	11	0.09	2	0.0024
BP	GO:0044262	cellular carbohydrate metabolic process	11	0.09	2	0.0024
BP	GO:0044723	single-organism carbohydrate metabolic p...	16	0.13	2	0.0052
BP	GO:0009059	macromolecule biosynthetic process	19	0.15	2	0.0073
BP	GO:0034645	cellular macromolecule biosynthetic proc...	19	0.15	2	0.0073
BP	GO:0005975	carbohydrate metabolic process	33	0.27	2	0.0220
BP	GO:0008653	lipopolysaccharide metabolic process	3	0.02	1	0.0243
BP	GO:0009103	lipopolysaccharide biosynthetic process	3	0.02	1	0.0243
BP	GO:0009058	biosynthetic process	133	1.08	3	0.0462

Category: MF
Category	GO ID	GO Term	Annotated	Expected	Significant	p-value
MF	GO:0030234	enzyme regulator activity	6	0.01	1	0.0140

Essentiality

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