Organism : Bacillus cereus ATCC14579 | Module List :
Regulation information for BC1130(Mouseover regulator name to see its description)
Motif information (de novo identified motifs for modules)
There are 4 motifs predicted.
|Motif Id||e-value||Consensus||Motif Logo|
Module neighborhood information for BC1130
|Gene||Common Name||Description||Module membership|
|BC0022||BC0022||Pyrazinamidase (NCBI ptt file)||9, 256|
|BC0193||BC0193||hypothetical protein (NCBI ptt file)||343, 440|
|BC0212||BC0212||hypothetical protein (NCBI ptt file)||9, 128|
|BC0312||BC0312||UDP-glucose 4-epimerase (NCBI ptt file)||9, 263|
|BC0314||BC0314||Glycosyltransferase (NCBI ptt file)||9, 506|
|BC0460||BC0460||hypothetical protein (NCBI ptt file)||9, 364|
|BC0484||BC0484||hypothetical protein (NCBI ptt file)||9, 25|
|BC0563||BC0563||Biotin carboxyl carrier protein (NCBI ptt file)||9, 85|
|BC0651||BC0651||Two component system histidine kinase (NCBI ptt file)||440, 478|
|BC0652||BC0652||Two-component response regulator (NCBI ptt file)||228, 440|
|BC0771||BC0771||Protein erfK/srfK precursor (NCBI ptt file)||9, 85|
|BC0934||BC0934||hypothetical protein (NCBI ptt file)||9, 85|
|BC1014||BC1014||Quinone oxidoreductase (NCBI ptt file)||364, 440|
|BC1020||BC1020||hypothetical Membrane Associated Protein (NCBI ptt file)||9, 150|
|BC1040||BC1040||hypothetical protein (NCBI ptt file)||9, 146|
|BC1046||BC1046||hypothetical protein (NCBI ptt file)||9, 489|
|BC1074||BC1074||hypothetical protein (NCBI ptt file)||148, 440|
|BC1075||BC1075||Beta-lactamase repressor (NCBI ptt file)||219, 440|
|BC1077||BC1077||Transcriptional regulator, TetR family (NCBI ptt file)||304, 440|
|BC1130||BC1130||hypothetical protein (NCBI ptt file)||9, 440|
|BC1254||BC1254||hypothetical protein (NCBI ptt file)||9, 428|
|BC1336||BC1336||Sporulation kinase D (NCBI ptt file)||6, 440|
|BC1678||BC1678||JEMB (NCBI ptt file)||9, 123|
|BC1848||BC1848||Prophage helix-turn-helix protein (NCBI ptt file)||9, 85|
|BC1935||BC1935||hypothetical protein (NCBI ptt file)||9, 85|
|BC2115||BC2115||Transglutaminase-like enzymes, hypothetical cysteine proteases (NCBI ptt file)||9, 225|
|BC2379||BC2379||Transcriptional regulator (NCBI ptt file)||9, 85|
|BC2496||BC2496||D-alanyl-D-alanine carboxypeptidase (NCBI ptt file)||9, 139|
|BC2558||BC2558||Transcriptional regulator (NCBI ptt file)||7, 440|
|BC2620||BC2620||Penicillin-binding protein transpeptidase (NCBI ptt file)||9, 141|
|BC2742||BC2742||Transcriptional regulator, GntR family (NCBI ptt file)||9, 453|
|BC2857||BC2857||hypothetical protein (NCBI ptt file)||9, 416|
|BC2988||BC2988||Transcriptional regulator, Cro/CI family (NCBI ptt file)||100, 440|
|BC2996||BC2996||Transcriptional regulator, PadR family (NCBI ptt file)||7, 440|
|BC3105||BC3105||Transcriptional regulator, AraC family (NCBI ptt file)||9, 141|
|BC3120||BC3120||Succinoglycan biosynthesis protein (NCBI ptt file)||9, 341|
|BC3146||BC3146||Peptidoglycan N-acetylglucosamine deacetylase (NCBI ptt file)||9, 428|
|BC3226||BC3226||hypothetical protein (NCBI ptt file)||440, 449|
|BC3279||BC3279||hypothetical protein (NCBI ptt file)||7, 440|
|BC3301||BC3301||hypothetical Cytosolic Protein (NCBI ptt file)||9, 230|
|BC3334||BC3334||2-haloalkanoic acid dehalogenase (NCBI ptt file)||15, 440|
|BC3434||BC3434||Transcriptional regulator, DeoR family (NCBI ptt file)||9, 85|
|BC3514||BC3514||Glucose-1-phosphate cytidylyltransferase (NCBI ptt file)||9, 487|
|BC3636||BC3636||hypothetical Cytosolic Protein (NCBI ptt file)||308, 440|
|BC3703||BC3703||Phage protein (NCBI ptt file)||9, 141|
|BC3996||BC3996||hypothetical Exported Protein (NCBI ptt file)||20, 440|
|BC4337||BC4337||hypothetical Membrane Spanning Protein (NCBI ptt file)||440, 443|
|BC4422||BC4422||Nicotinate-nucleotide pyrophosphorylase [carboxylating] (NCBI ptt file)||9, 55|
|BC4453||BC4453||Phage protein (NCBI ptt file)||62, 440|
|BC4532||BC4532||hypothetical protein (NCBI ptt file)||7, 440|
|BC4617||BC4617||hypothetical Membrane Spanning Protein (NCBI ptt file)||9, 141|
|BC4660||BC4660||Acetoin utilization protein acuA (NCBI ptt file)||440, 478|
|BC4933||BC4933||Methyltransferase (NCBI ptt file)||303, 440|
|BC5011||BC5011||hypothetical protein (NCBI ptt file)||422, 440|
|BC5352||BC5352||two-component response regulator YocG (NCBI)||41, 440|
|BC5353||BC5353||Two-component sensor kinase yocF (NCBI ptt file)||41, 440|
|BC5424||BC5424||Methyl-accepting chemotaxis protein (NCBI ptt file)||416, 440|
Gene Page Help
If the gene is associated with a module(s), its connection to given modules along with other members of that module are shown as network by using CytoscapeWeb. In this view, each green colored circular nodes represent module member genes, purple colored diamonds represent module motifs and red triangles represent regulators. Each node is connected to module (Bicluster) via edges. This representation provides quick overview of all genes, regulators and motifs for modules. It also allows one to see shared genes/motifs/regulators among diferent modules.
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Identity of gene members in a module may help to identify potential interactions between different functional modules. Therefore, neighbor genes that share the same module(s) with gene under consideration are shown here. For each memebr, gene name, description and modules that contain it are listed.
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CircVisOur circular module explorer is adapted from visquick originally developed by Dick Kreisberg of Ilya Shmulevich lab at ISB for The Cancer Genome Atlas. We use simplified version of visquick to display distribution of module members and their interactions across the genome. This view provides summary of regulation information for a gene. The main components are;
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